Evolution and populations genetics
Brownian motion on the Yule tree: variance of the sample variance | |
Serik Sagitov |
Crump-Mode-Jagers branching processes in disease outbreaks | |
Giacomo Plazzotta, Caroline Colijn |
The Classification of Protein Domains into Families and Clans through Entropy Measures based Methods | |
Rubem P. Mondaini |
Direct evidence of the strong co-evolution of somatic and organelle genomes | |
Michael Sadovsky, Anna Chernyshova |
A dynamic network population model with strategic link formation governed by individual preferences | |
Mark Broom |
N. gonorrhoeae NG-MAST genotype and antibiotic resistance profile: is there any correlation? | |
Konstantin Konstantinovich Avilov |
Information geometry and the Wright-Fisher model of mathematical population genetics | |
Tat Dat Tran |
Evolution of condition-dependent immigration | |
Mats Gyllenberg, Eva Kisdi, Helene Weigang |
Multi-gene-loci inheritance in resistance modeling for polyploid populations | |
Antje Vollrath |
Macroscopic and microscopic structures of the family tree for a decomposable branching process | |
Vladimir Alexeevich Vatutin |
Mathematical Models of Speciation with Gene Flow | |
Ilse Hoellinger, Joachim Hermisson |
Tree-free phylogenetic comparative methods: what can we say about a species' trait without observing the phylogeny | |
Krzysztof Bartoszek, Serik Sagitov |
Branching processes in random environment | |
Elena Evgenievna Dyakonova |
Clines With Partial Panmixia In An Environmental Pocket | |
Linlin Su |
Host-Parasite Evolution with a Predator | |
Jaspreet Toor |
An effect of optimal harvest on an evolution of population with age structure | |
Oksana Zhdanova |
Evolutionary dynamics of site-selection | |
Kalle Parvinen |
ABC METHODOLOGY TO ESTIMATE THE RATE OF MUTATION OF A Y-LINKED GENE IN A TWO-SEX BRANCHING MODEL | |
Cristina Gutiérrez Pérez |
Minimum Hellinger distance estimation for Controlled Branching Processes | |
Carmen Minuesa Abril |
Rate of adaptation in sexuals and asexuals: A solvable model of the Fisher-Muller effect | |
Su-Chan Park, Joachim Krug |
Repair and not segregation of damage is the optimal unicellular ageing strategy | |
Robert J Clegg, Rosemary J Dyson, Jan-Ulrich Kreft |
Non-monotonic effects of migration in subdivided populations | |
Pierangelo Lombardo, Luca Dall'Asta, Andrea Gambassi |
Adaptive dynamics on an environmental gradient that changes over a geological time-scale | |
Jaakko Toivonen |
Modeling the impact of selection in protein coding genes | |
Carina Farah Mugal, Ingemar Kaj |
Measures of natural selection in protein coding genes | |
Carina Farah Mugal, Ingemar Kaj |
Evolutionary Models in Structured Populations | |
Christoforos Hadjichrysanthou |
The ecology of resistance – density dependent feedbacks to optimal investment | |
Ruairi Donnelly |
Do sheep cheat themselves by mounting weak immune responses: an adaptive dynamics approach | |
Daniel Balaz, Christina A Cobbold, Michael J Stear, Joaquín Prada Jiménez de Cisneros, Rodney Beard, Louise Matthews |
Protection of the durability of major resistance genes to plant viruses with quantitative resistance, a modeling approach. | |
Elsa Rousseau, Jerome Coville, Alain Palloix, Frederic Fabre, Ludovic Mailleret, Benoit Moury, Frederic Grognard |
A duality relation for type distributions on partitions in the Moran model with recombination | |
Mareike Esser |
Exploring the dynamics of evolution on small networks | |
Laura Hindersin |
Evolution of resource utilization: the coexistence of specialists and generalists | |
Tuomas Nurmi |
Spatial model of stress-induced transposon proliferation. | |
Mateusz Kitlas, Michał Startek, Arnaud Le Rouzic, Dariusz Grzebelus, Anna Gambin |
Continuous approximations of Discrete Processes | |
Fabio Chalub, Max Souza |
Long-scale structures in genomes | |
Michael Sadovsky, Xenia Nikitina, Eugene Bushmelev |
Super-symmetry in genomes and its evolution | |
Michael Sadovsky, Yaroslav Grebnev |
The impact of sexual vs. asexual reproduction on transposon proliferation dynamics | |
Krzysztof Gogolewski, Anna Gambin, Dariusz Grzebelus, Arnaud Le Rouzic, Michał Startek |
Real time forecasting of near-future evolution: theory and experiments | |
Philip Gerrish |
Effect of Neutral Spaces in a Markov Chain Model of Bacterial Evolution | |
Kush Chandra Khosla, Dan Nichol, Jacob Scott |
Can excessive mutation prevent adaptive evolution? | |
Sophie Penisson |
On the existence and stability of equilibrium probability measures in Gaussian mutator models with environmental stress within Fisher's geometric framework. | |
Michał Piotr Startek, Arnaud Le Rouzic, Anna Gambin |
Evolutionary accessible pathways to global fitness maximum on generalized hypercubes | |
Marcin Zagórski |
Predicting the evolution of resistance in Atlantic salmon in response to a macro-parasite invasion | |
Andy Hoyle |
Quantifying the effects of adaptation on genealogies | |
Taylor Austin Kessinger |
The Right Word in the Right Place? Using an evolutionary model to link codon usage bias to an organism’s fitness. | |
Jan-Hendrik Trösemeier, Susanne Lipp, Holger Lößner, Ina Koch, Christel Kamp |
Multiscaling Modelling in Evolutionary Dynamics | |
Max Souza |
Global Stability in Selection-Migration Models | |
Josef Hofbauer |
Evolutionary multiplayer games and polynomials in Bernstein form | |
Jorge Peña |
Adaptive gene introgression after secondary contact | |
Hildegard Uecker, Derek Setter, Joachim Hermisson |
Type distributions on partitions and their ancestry in the Moran model with recombination | |
Sebastian Probst |
Developmental Biology
Model and Simulation of Actin-dependent Cell Movement | |
Angelika Manhart |
Unravelling the rules of multicellular migration during development with models and experiments. | |
Linus J Schumacher |
A quantitative mechanical model of developing epithelial sheets | |
Jochen Kursawe |
Collective cell movement promotes synchronization of coupled genetic oscillators | |
Koichiro Uriu |
Modeling the galectin patterning network of the developing chick limb skeleton | |
Tilmann Glimm |
Modelling chemotactic motion of cells in biological tissues | |
Bakhti Vasiev |
Computational model of trichome spacing pattern formation on growing linear leaf blade | |
Ulyana Zubairova, Sergey Nikolaev, Alexey Doroshkov, Dmitry Afonnikov |
Optimal Control of 2D Cell Migration | |
Konstantinos Blazakis |
A parameter study of a computational angiogenesis model suggests that limited Apelin sensitivity enables tip cells to lead sprouts | |
Margriet Palm, Marchien Dallinga, Erik van Dijk, Ingeborg Klaassen, Reinier Schlingemann, Roeland Merks |
Accelerating reaction-diffusion simulations with non-local position jumping | |
Paul Richard Taylor |
The mechanical and the neurogenic hypothesis for fingerprint formation | |
Michael Kücken |
A selection criterion for spatial patterns in reaction-diffusion systems | |
Tatiana T. Marquez-Lago |
Application of systems biology approach to analyze the development of wheat leaf pubescence. | |
Alexey Vladimirovich Doroshkov, Ulyana Zubairova, Mikhail Genaev, Sergey Nikolaev, Tatyana Pshenichnikova, Dmitry Afonnikov |
A Cell-Based Simulation Environment for Morphogenetic Problems | |
Simon Tanaka |
The tool to study plant hormone auxin distribution in the plant root | |
Fedor Kazantsev, Victoria V Mironova |
Modelling and analysis of filopodia extension regulated by VEGF-Delta-Notch signalling in angiogenic tip-cell selection | |
Sunny Modhara |
Simulating multicellular systems using subcellular element approximations | |
Majid Abedi |
MARKOV CHAIN MODEL TO EXPLAIN THE DYNAMICS IN HUMAN DEPRESSION | |
Souvik Bhattacharya |
Cancer
Therapies targeting hypoxia reduce tumor volume and delay the malignant transition in gliomas | |
Alicia Martínez-González, Mario Durán-Prado, Gabriel F Calvo, Francisco J Alcaín, Luis A Pérez-Romasanta, Victor M Pérez-García |
Asymmetrical cell division arising in stem cells and cancer | |
Ali Ashher Zaidi |
Using process algebra to quantify the radiation induced bystander effect | |
Rachel Lintott |
Modelling Tumour heterogeneity and homeostasis disruption in bone cancer | |
David Basanta |
Mechanical Forces in Vascular Sprouting | |
Rui Travasso |
Mathematical modeling predicts exponential growth kinetics for metastases in the lymphatic vessels in the absence of vascularization | |
Ruth Elizabeth Griswold, Simona Podgrabinska, Suvendu Das, Boyce E. Griffith, Charles S. Peskin, Mihaela Skobe |
Optimal control in a mathematical model of low grade glioma | |
juan Belmonte-Beitia |
Multiscale modelling and analysis for cancer development: exploring the role of matrix-degrading enzymes and adhesion in invasion | |
Dumitru Trucu, Mark A. J. Chaplain |
Biphasic modulation of cancer stem cell driven solid tumor dynamics in response to reactivated replicative senescence | |
Heiko Enderling |
Cell migration modeling and data analysis in lung cancer | |
Damian Stichel |
Computer Simulation of the Metastatic Progression and Treatment Interventions | |
Anja Bethge, Udo Schumacher, Gero Wedemann |
Targeting cancer dormancy | |
Feng Fu |
Theoretical investigation of the effect of methylation on deoxy cytidine- deoxy guanosine dinucleotide | |
Nastaran Asghari Asghari Moghaddam |
A systems approach to studying collective migration of cancer cells | |
Alistair Mark Middleton, Damian Stichel, Franziska Matthaeus |
Modelling the role of adhesion in the heterogeneous dynamics of cancer invasion | |
Pia Domschke, Dumitru Trucu, Alf Gerisch, Mark Chaplain |
Genetic drift rescues cancer from evolutionary suicide | |
Scott Thomas Bickel, Joseph D Juliano, John D Nagy |
Uncertainty quantification in a model of tumour invasion | |
Alf Gerisch |
Mathematical Model of Glioma Invasion | |
Radhia Eljazi |
Evolution of resistance to platinum drugs and PARP inhibitors in BRCA-associated cancers. | |
Kimiyo N. Yamamoto |
Modeling DNA-Methylation Profiles in Ageing and Cancer. | |
Jens Przybilla, Thimo Rohlf, Joerg Galle |
Find the Glass Phase Transition Properties in a multi-cell model for tumorogenesis | |
Yuting Lou |
Mathematical modelling of the dynamics of multiple myeloma cell accumulation | |
Marcel Mohr |
MULTISCALE MODELLING OF VASCULAR TUMOUR GROWTH AND ANGIOGENESIS INCLUDING TUMOUR METABOLISM | |
Simona Galliani |
Stochastic tunneling of two mutations in a population of cancer cells | |
Hiroshi Haeno, Yosef E Maruvka, Yosef E Maruvka, Yoh Iwasa, Yoh Iwasa, Franziska Michor, Franziska Michor |
Simple principles can explain the in vivo population dynamics of tissue specific stem cells | |
Benjamin Werner |
The Role of Stem Cell Plasticity in Ductal Carcinoma | |
Noemi Picco, Alexander R. A. Anderson |
Modeling the regulation of bivalent genes | |
Joerg Galle, Jens Przybilla |
The role of CCN1 in glioma virotherapy with oncolytic herpes simplex virus | |
Karly Jacobsen |
Towards patient-specific biology-driven heterogeneous radiation planning: using a computational model of tumor growth to identify novel radiation sensitivity signatures. | |
Jacob Gardinier Scott, Alexander G Fletcher, Claire L Timlin, David Basanta, Alexander R A Anderson, Philip K Maini |
Normal wound healing and tumor angiogenesis as a game of competitive inhibition | |
Irina Kareva |
Adhesion Defects are Sufficient to Initiate Polycystic Kidney Disease | |
Julio Monti Belmonte |
POD-DEIM Approach on Dimension Reduction of a Model of Chemotactic Bacteria Patterns in Semi-Solid Medium | |
Gabriel Dimitriu |
A modelling framework for elucidating the interplay between drug transport and cellular effects in tumours | |
J Krishnan |
Metastatic dynamics and systemic inhibition of angiogenesis: implications for global dormancy and metastatic acceleration after surgery | |
Sebastien Benzekry |
Controllability of models of anticancer combined therapy with multiple delays in control. | |
Andrzej Swierniak |
Stochastic models for tumors submitted to a radiotherapy treatment | |
Pierre Vallois |
On a nonstandard numerical algorithm for a mathematical model of cancer invasion | |
Mikhail Kolev |
Population Dynamics and Conservation Biology
On the life of populations in habitats with constant carrying capacity | |
Peter Jagers |
Fox-Voles Interactions: Selection and Dynamical Properties of a Multi-Species Functional Response. | |
Virgile Baudrot |
The influence of turbulence on the competition between buoyant and non-buoyant plankton prey species in a shallow lake. | |
Michael Bengfort |
The coupled Ricker’s population models: effects of clustering | |
Matvey Kulakov, Galina Neverova |
Consequences of Obesity Epidemic; the Impact of “Vertical Transmission” of Obesity on Population Dynamics | |
Keisuke Ejima |
Traveling wavefronts in population and disease models with nonlocal reaction and delay | |
Peter Pang |
Modelling stage-structured populations of crop pathogens: 1) under environmental change and 2) as part of a food web, using delay differential equations. | |
Helen Kettle |
Let Markov chains evolve along genealogies | |
Vincent Bansaye |
How symbionts turning from friends to foes induce Allee effects in predators | |
Mickael Teixeira Alves, Frank Hilker |
A nonlinear age-structured model of semelparous species | |
Radosław Wieczorek |
Intraspecific competition models considering two resources | |
Nora Stahnke |
On a sexual model of phenotypic evolution | |
Ryszard Rudnicki |
On the analytical study of a nonlinear SPDE arising as a model of phytoplankton aggregation | |
Nadjia El Saadi, Zakia Benbaziz |
Emergence of Cooperation with chain-reaction-extinction | |
Hyeong-Chai Jeong |
EQUILIBRIUM AND QUASI-STATIONARY STATES OF NON-LINEAR AGE-STRUCTURED MONOCYCLIC CELL POPULATION MODEL | |
Vitalii V. Akimenko |
Mass-structured individual based model for the chemostat | |
Coralie Fritsch |
MACROSCALE MATHEMATICAL MODELS FOR E.COLI MOTION | |
Stefano Belloni |
Spreading Speeds for Stage Structured Plant Populations in Fragmented Landscapes | |
Mark Alexander Gilbert, Steven M White, James M Bullock, Eamonn A Gaffney |
A multivariate SDE model for the time evolution of death rates with an application to the Portuguese population | |
Sandra Lagarto, Carlos A. Braumann, Dulce Gomes |
Estimation of the variance effective population size in age-structured populations | |
Fredrik Olsson, Ola Hössjer |
An optimal control problem for a reaction-diffusion model of invasive species | |
Narcisa Apreutesei |
Simulation modeling of spatial-temporal dynamics of the woody community of shade-tolerant and light-loving species | |
Alexey Nikolaevich Kolobov |
Evolution dynamics of a model for gene duplication under adaptive conflict | |
Jeong-Man Park |
Modeling circadian clock-cell cycle interaction effects on cell population growth rates | |
Raouf El Cheikh, Samuel Bernard, Nader El Khatib |
Pareto-efficient fishing strategies allow large conservation benefits for small costs in yield | |
Niklas L.P. Lundström |
Estimating effective bounds of population growth in a variable environment | |
Sonja Radosavljevic, Bengt Ove Turesson, Uno Wennergren, Vladimir Kozlov |
On optimization of substrate removal in a bioreactor with biofilms and suspended biomass | |
Alma Masic, Hermann J Eberl |
Optimization of biogas production in a model for anaerobic digestion with inhibition | |
Marion Weedermann |
Number fluctuations of populations with a short life cycle: Is it the result of density dependent regulation or influence of external factors? | |
Galina Neverova, Efim Frisman |
Optimal natural enemies deployment in patchy environments for augmentative biological control | |
Bapan GHOSH, Frédéric Grognard, Ludovic Mailleret |
Spatio-temporal Structure of Branching Random Walks in Non Homogeneous Environments | |
Elena Borisovna Yarovaya |
Impact of extended diapause on the rate of invasion of a population of triatomine with an Allee effect | |
Amel Bessenouci Hakem |
Period-length estimate of Lyapunov exponent for probing transient chaos in model of population dynamics | |
Katarzyna Buszko, Krzysztof Stefański |
Modelling populations subjected to pulsed taking regimes | |
Ludovic Mailleret, Valérie Lemesle, Frédéric M Hamelin, Vincent Calcagno, Frédéric Grognard |
Frequency-dependent models of population dynamics | |
Georgiy P Karev |
Dynamics of spatial pattern networks in predator-prey systems | |
Josinaldo Menezes da Silva |
The bifurcation analysis of the conceptual models of the CRISPR host-virus population dynamics | |
Faina S Berezovskaya, Georgiy P Karev |
Analysis of ecological time series using state-space models | |
María Soledad Castaño, Hèlene Guis, Jean Vaillant, Thomas Balenghien, Jean-Claude Delécolle, Thierry Baldet, David Pleydell |
Bayesian method for assessing environmental pollution effects on organism dynamic energy budget | |
Baba Issa Camara |
Symmetry based methods for constructing exact solutions of the diffusive Lotka-Volterra system | |
Roman CHERNIHA |
Logistic approximations and their consequences for bifurcations patterns and long-run dynamical behavior | |
Torsten Axel Lindström |
Stochastic semigroups in structured population models | |
Katarzyna Pichor |
Weakly Supercritical Branching Random Walks | |
Ekaterina Antonenko |
Global solvability and stability of equilibrium of multi-species model with cross diffusion | |
Herve Michel DJOUOSSEU TENKAM, Roumen Anguelov |
Ecology
From Individual to Collective Dynamics in Argentine Ants | |
Maria Vela, Marco A. Fontelos |
Insights from the Application of Temporal Difference Learning in Models of Foraging | |
Jan Teichmann |
Grazing strategies for the control of gastrointestinal nematodes in sheep: a stochastic model in a seasonal environment. | |
Martin Lopez Garcia |
Mathematical modelling of seasonal migration | |
John Gerard Donohue, Petri Tomas Piiroinen |
Niche theory for a complicated world | |
Géza Meszéna, György Barabás, András Szilágyi |
Optimal resource allocation in the plant-fungi mutualism for a growing system | |
Kouki Uchinomiya, Yoh Iwasa |
Evolution of root and shoot growth allocation in trees | |
Magnus Lindh, Eddie Wadbro, Lai Zhang, Åke Brännström |
A fractional-order diffusion model to predict transgenic pollen dispersal | |
Emmanuel Hanert, Valentin Vallaeys, Rebecca Tyson, Eric Deleersnijder |
Phase diagram of a fish school model: marches versus circles determined by the relative strength of alignment and cohesion | |
Yuki Kubo, Yoh Iwasa |
Games of Corruption: How to Suppress Illegal Logging. | |
JoungHun Lee, Karl Sigmund, Ulf Dieckmann, Yoh Iwasa |
Reversible phenotypic plasticity with continuous adaptation | |
Ferdinand Pfab |
Incorporating environmental factors into tick-borne disease models | |
Adrian Worton |
A resource-based model of multi-species competitions under mutations | |
Weini Huang |
The importance of distance-dependent synchrony of environmental coloured noise in patchy environments | |
Uno Wennergren |
Response of Poikilotherms to Extreme Temperature Events | |
Rebecca C. Tyson, Garrett Culos |
Evolution of dispersal syndromes | |
Margarete Utz, Hannah Dugdale, Franjo Weissing, Jan Komdeur |
Modeling Tree Crown Expansion with a Biomass Transport Equation | |
Robert Beyer |
The ecology of wildlife disease surveillance | |
Glenn Marion |
Emergence of diversity-stability-productivity relationships in a generic multi-species resource competition framework | |
Stephen Catterall, Glenn Marion |
Evolutionary stability and geographic variation of pollination networks | |
Arndt Telschow, Shoko Sakai |
Resolving the complexity of ecosystem models using network theory | |
Caner Kazanci |
A hierarchical Bayesian model for gene ranking in in metagenomics based on differential abundance | |
Viktor Jonsson |
Ecological Traps: Modeling habitat selection for mobile animals in heterogeneous landscapes | |
Jessica Hearns |
Disease in group-defending prey can benefit predators | |
Andrew M. Bate |
Fractal spatial statistics as a heuristic for dynamic persistence in vegetative ecosystems | |
Mike A Irvine, Matt Keeling, James Bull |
Epidemics
New agent-based model for an influenza epidemic spreading in cities. | |
Valeriy Dmitriy Perminov |
Measuring Disease Spread in Stochastic Epidemic Models | |
M J Lopez-Herrero |
Assessment of the invasion speed of triatomine populations, vectors of Chagas disease | |
Tewfik Mahdjoub, Christopher Kribs-Zaleta |
Probabilistic differential diagnosis of imported cases: A case study of MERS | |
Hiroshi Nishiura |
Dynamics of low and high pathogenic avian influenza in wild and domestic bird populations | |
Necibe Tuncer |
A STOCHASTIC EPIDEMIC MODEL FOR COMPUTER VIRUSES WITH ANTIDOTAL COMPUTERS | |
Julia Amador |
Which nodes should be prioritised for intervention to effectively control epidemic outbreaks in networks? | |
Christoforos Hadjichrysanthou |
Markovian Susceptible-Infectious-Susceptible (SIS) Dynamics on Finite Networks: Endemic Prevalence and Invasion Probability | |
Robert Wilkinson |
Counter-intuitive responses to movement-based disease control measures in livestock | |
Jamie Christian Prentice |
Information Content of Household-stratied Epidemics | |
Timothy Kinyanjui, Lorenzo Pellis, House Thomas |
Vaccination and Clinical Severity: Is the Effectiveness of Contact Tracing and Case Isolation Hampered by Past Vaccination | |
Kenji Mizumoto |
Impact of treatment length and treatment default on drug-resistant tuberculosis epidemiology | |
Paula Rodrigues |
Treatment provision in spatially structured models for environmentally transmitted infections | |
Katy Gaythorpe, Ben Adams |
STIs on dynamic partnership networks -- characterizing R_0 | |
Ka Yin Leung, Mirjam Kretzschmar, Odo Diekmann |
Combining statistical and dynamic modelling approaches to within-host analysis of Porcine Reproductive and Respiratory Syndrome (PRRS) virus infections | |
Zeenath Islam, Stephen C Bishop, Nicholas J Savil, Raymond R. R. Rowland, Joan K Lunney, Benjamin Trible, Andrea Doeschl-Wilson |
Exploring viral evolution to characterise HCV transmission dynamics in a high-risk prison population | |
Fabio Luciani |
Geometric Epidemics: An application of differential geometric sampling methods to stochastic epidemic models | |
Samuel Charles Bilson |
End of an SIR epidemic on a random network | |
Pieter Trapman, Ana Serafimović |
A game-theoretic approach to diagnostic test adoption and disease control in livestock | |
Rodney Beard |
Epidemic spread on weighted networks – the impact of casual contacts | |
Christel Kamp, Mathieu Moslonka-Lefebvre, Samuel Alizon |
On a simple stochastic epidemic SEIHR model and its diffusion approximation | |
Marco Ferrante |
Epidemics and density-dependent diffusion on heterogeneous metapopulations | |
Jordi Ripoll |
Modeling the individual vaccination decisions : a structural explanation | |
Gabriel TURINICI |
Vector-borne disease dynamics with host circulation | |
Max Souza |
Human Behaviour During Epidemics: Results of a Virtual Experiment | |
Adam Kleczkowski, Savi Maharaj, Susan Rasmussen, Lynn Williams |
Discretization of the SIS-Volterra model by nonstandard finite difference method | |
Jean M-S Lubuma, Yibeltal A Terefe |
Modeling of the spread and control of Mycobacterium avium subsp. paratuberculosis in a metapopulation of cattle herds | |
Gael Beaunée, Elisabeta Vergu, Pauline Ezanno |
An opportunistic diesases model | |
Marcos Marva |
Global dynamics of compartmental models for the spread of ectoparasite-borne diseases | |
Attila Dénes, Gergely Röst |
Analysis of Labour Productivity in the Presence of Substance Abuse | |
Isaac Takaidza |
Influence of Climate Variables on Scorpion Envenomation | |
Schehrazad SELMANE |
Analysis of a Deterministic Model for the Transmission Dynamics of Influenza | |
Adnan Ahmed Khan |
Optimal treatment- and diagnostic strategies in the context of ‘treatment for prevention’ against HIV-1 in resource-rich and -poor settings | |
Sulav Duwal, Stefanie Winkelmann, Christof Schütte, Max von Kleist |
Stochastic modelling for age-structured dengue epidemiology with and without seasonal variation | |
Hannah Woodall, Ben Adams |
The exclusion problem in seasonally forced eco-epidemiological systems | |
Jonathan Greenman |
A Study of Epidemiological Processes by Criticality Analysis | |
Hessam Hessami, Nicolas Glade |
How to adapt vine growth and cultural practices to better control an outbreak of powdery mildew on a vineyard? | |
Jean-Baptiste Burie, Jean-Baptiste Burie |
Evaluation of tuberculosis control programs in low-burden settings | |
Giorgio Guzzetta, Marco Ajelli, Denise Kirschner, Stefano Merler |
Modelling Aquatic Viral Dynamics: The Importance of Transmission | |
Eryll Ogg |
Optimal vaccination policies as Mean Field Games equilibriums | |
Laetitia Laguzet |
Mathematical Modelling of HIV/AIDS in a sex-structured population: Effect of Case Detection and Treatment} | |
Mini Ghosh |
Using mathematical modelling to design an optimal HIV prevention intervention among female sex workers: insights from Avahan AIDS Initiative in India | |
Jasmina Panovska-Griffiths |
Immunology
Reaction diffusion equations and the chronification of liver infections | |
Dirk Langemann |
Size matters: Mathematical modeling of the type-1 interferon induction | |
Lars Kaderali, Diana Clausznitzer |
Quantification of the acute phase of virus infection in HIV-1 infected humanized mouse | |
Hiroki Ikeda |
Modeling ecliptic phase of SHIV infection in cell culture | |
Yusuke Kakizoe |
Signaling pathway and gene network regulation of NFkB and cytokine mRNA expression in Mastitis | |
Nicoline Y den Breems, Don Kulasiri |
Modelling HTLV-I as a Multi-Locus System | |
Aaron G Lim |
Modelling the infection and immune dynamics induced by a pathogen targeting pulmonary macrophages: influence of strain virulence and host exposure | |
Natacha Go, Caroline Bidot, Catherine Belloc, Suzanne Touzeau |
Limit Theorems for Renyi Entropy and Divergence with Applications to DNA Diversity Analysis | |
Michal Tadeusz Seweryn |
A signal integration model of thymic selection and natural regulatory T cell commitment | |
Sahamoddin Khailaie, Philippe A Robert, Toker Arras, Jochen Hühn, Michael Meyer-Hermann |
The 4-dimensional nature of living molecular systems | |
Maurício Vieira Kritz |
Physiology
The Role of Osteocytes in Bone Turnover: A Mathematical Model | |
Jason M Graham |
A Mathematical Model for the Interaction of the Proteins MMP-1, TIMP-1, and ECM in a Wound | |
Hannah Pennington, Nitin Krishna, Richard Schugart, Canaan Coppola |
Generalized framework for cell-type and condition-specific metabolic models | |
Semidán Robaina Estévez, Zoran Nikoloski |
A simple model of wound healing in normal and diabetic mice | |
Lucie Bowden |
A morphoelastic model of dermal wound healing | |
Lucie Bowden |
Modeling of regulatory loops controlling galactolipid biosynthesis in the inner envelope membrane of chloroplasts | |
Eric Maréchal, Olivier Bastien |
A mechano-chemical model of neutrophil polarization | |
Kai Harold Kopfer |
Model of the dynamics of food intake, body weight and energy expenditure in rats | |
Marine Jacquier, Fabien Crauste, Christophe Soulage, Hédi Soula |
A Mathematical Model for Lymphangiogenesis in Wound Healing | |
Arianna Bianchi |
Mathematical modeling of hydrodynaimcal activation of intravascular blood coagulation and formation of fibre-like structures in intensive blood flow | |
Oleksii Rukhlenko, Ksenia Zlobina, Georgy Guria |
Spatial modelling of cytokine dynamics within osteoarthritic cartilage | |
Michelle Baker |
Mathematical Models of Retinal Degeneration | |
Paul Roberts, Helen Byrne, Alexander Foss, Phil Luthert, Eamonn Gaffney |
Integrative modelling and experimental validation of ammonia detoxification after drug induced liver damage | |
Geraldine Celliere, Ahmed Ghallab, Sebastian Henkel, Stefan Hoehme, Freimut Schliess, Sebastian Zellmer, Jan Hengstler, Dirk Drasdo |
Modelling the impact of plant shoot architecture on leaf cooling: coupled heat and mass transfer simulations | |
Lloyd Bridge |
MICROORGANISM'S GROWTH-ROBUSTNESS TRADE-OFF EXPLAINED BY SIMPLE GENERAL PRINCIPLES | |
Alessandro Bolli, Armindo Salvador |
Population-of-controllers model explains heterogeneous insulin secretion experiments | |
Andrea De Gaetano, Claudio Roberto Gaz, Pasquale Palumbo, Simona Panunzi |
A mathematical model to describe the flexibility of energy reserves at cellular scale | |
Masoomeh Taghipoor, Florence Gondret, Jaap VanMilgen |
A simplified, geometrical approach to the PKPD of inhaled bronchodilators | |
Claudio Roberto Gaz, Andrea De Gaetano, Simona Panunzi, George Cremona, Beverley Patterson |
A mathematical model for fluid-glucose-albumin transport in peritoneal dialysis | |
Roman CHERNIHA, Jacek Waniewski |
Neuroscience
Simultaneous modeling and clustering of multivariate time series - application to an animal model of alcohol addiction | |
Lilian Villarín Pildaín, Vineet Kumar, Franziska Matthäus |
Propagation of global resource fluctuations in a cell | |
Cheol-Min Ghim |
A simple decision making model for courtship song of Drosophila melanogaster | |
Birgit Bruggemeier, Mason Alexander Porter, Stephen Goodwin |
A one-dimensional moving-boundary model for tubulin-driven axonal growth | |
Stefan Diehl, Anders Heyden, Stefano Perna |
"Mathematical modelling of the dynamics and the role of the lipid composition in Alzheimer’s disease" | |
Guido Santos Rosales, Mario Díaz, Néstor Torres |
Regulatory Networks
Noise propagation in enzymatic reactions under transcriptional repression | |
Diego A Oyarzún, Jean-Baptiste Lugagne, Guy-Bart V Stan |
Dynamics of a Bistable Molecular Switch | |
Marta Tyran-Kaminska |
Autocrine FGF feedback can establish distinct states of Nanog expression in pluripotent stem cells | |
Dora Lakatos |
Modeling and analysis of a gene-regulatory feed-forward loop with basal expression of the second regulator | |
Louisa Roselius, Dirk Langemann, Johannes Müller, Burghard Hense, Dieter Jahn, Richard Münch |
A Mathematical Model of Intermolecular Autophosphorylation with an Application to Aurora B Kinase | |
Kevin Doherty |
Stochastic stability of a compound cell-cycle model | |
Joanna Tyrcha, John Hertz |
Time delays in stochastic models of gene regulation | |
Jacek Miękisz |
Sparsity promoting Bayesian parameter estimation and uncertainty quantification. Application to the gap gene system of Drosophila melanogaster. | |
Nikolaos Sfakianakis, Martin Simon |
A Tropical Method based on Newton Polygon Approach for Algebraic Analysis of Biochemical Reaction Networks | |
Satya Swarup Samal, Ovidiu Radulescu, Dima Grigoriev, Holger Fröhlich, Andreas Weber |
Early stage dynamics of miRNA-driven FFL depends upon miRNA action | |
Alexander M. Samsonov, Maria A. Duk, Maria G. Samsonova |
From signaling processes to large-scale behavior - E.coli chemotaxis, search strategy and pattern formation | |
Franziska Matthäus |
Mathematical Analysis and Joint Modeling of the M2 Receptor-dependent Signaling And Secondary Messenger Network in CHO Cells | |
Benjamin Engelhardt, Ramona Schrage, Christian Tränkle, Klaus Mohr, Maik Kschischo, Holger Fröhlich |
Algebraic Statistical Model for Biochemical Dynamics Inference | |
Grzegorz A Rempala |
Logic-based models and ODEs - a bidirectional modeling approach | |
Claudia Stötzel, Firdevs Topcu-Alici, Susanna Röblitz, Heike Siebert |
Relaxation oscillator dynamics of MAPK cascade enabled by local excitation–global inhibition | |
Marek Kochanczyk, Emilia Kozlowska, Pawel Kocieniewski, Joanna Jaruszewicz, William S. Hlavacek, Tomasz Lipniacki |
Modelling spatio-temporal dynamics in regulatory networks for cell polarity | |
Peter Rashkov |
Stochastic model of gene expression | |
Weronika Siwek |
Bacterial quorum sensing with negative feedback(s) | |
Christina Kuttler |
Simulation and analysis of bistability in osteochondrogenesis | |
Morgan Germain, Johan Kerkhofs, Liesbet Geris |
Understanding bistability in yeast glycolysis using general properties of metabolic pathways | |
Bob Planqué |
INTEGRATION BETWEEN SIGNALING AND ANTIOXIDANT PROTECTION BY THE PEROXIREDOXIN/THIOREDOXIN/THIOREDOXIN-REDUCTASE SYSTEM | |
Gianluca Selvaggio, Pedro M. B. M. Coelho, Armindo Salvador |
Adaptive Hybrid Simulations for Multiscale Stochastic Reaction Networks | |
Benjamin Hepp, Ankit Gupta, Mustafa Khammash |
Mathematical modeling of interactions between HSF and NFkB pathways | |
Jaroslaw Smieja, Malgorzata Kardynska |
Exploiting stochastic focusing for noise reduction through feedback | |
Andreas Milias-Argeitis, Pavol Bauer, Stefan Engblom, Mustafa Khammash |
Reduction of biochemical systems by delayed quasi-steady state assumptions | |
Tomas Vejchodsky |
Extending the Limits of Bifurcation Analysis: an Illustration from Yeast Glycolysis | |
Gosse Borger Overal |
Non-classic effects in stochastic gene expression | |
Tatiana T. Marquez-Lago |
Mathematical models of mi-RNA dependent gene regulation in experimental procedures | |
Jaroslaw Smieja, Marzena Dolbniak |
The search for a core functionality network in chondrocyte differentiation using heuristic and genetic algorithms | |
Johan Kerkhofs, Hans Van Oosterwyck, Liesbet Geris |
Unraveling subpopulation structures and dynamics with ODE constrained mixture modeling | |
Jan Hasenauer, Christine Hasenauer, Tim Hucho, Fabian Theis |
The cell nucleus regulates not only the dynamics of gene expression, but also its noise. | |
Jaroslav Albert |
Multi-parameter sensitivity analysis based on the conditional mutual information. | |
Agata Charzyńska |
Identification of noise sources in gene regulatory and signal transduction networks | |
Michal Komorowski |
Modelling Fast CICI Calcium Waves | |
Zbigniew Peradzynski, Bogdan Kazmierczak |
Intrinsic and extrinsic fluctuations in a spatiotemporal oscillatory system | |
Jan Klosa |
Exact quadratization of nonlinear systems: a useful tool in mathematical biology | |
Pasquale Palumbo, Francesco Carravetta |
Regulation RTK signaling specificity by tuning early endosome distribution | |
Yannis Kalaidzidis, Roberto Villaseñor, Marino Zerial |
Parameter Estimation for the System Size Expansion | |
Fabian Froehlich, Jan Hasenauer, Fabian Theis |
Elucidating the role of termination-based feedback mechanisms in mRNA translation in yeast | |
J Krishnan |
p53 regulatory module controlling cell cycle arrest and apoptosis in response to irradiation | |
Marta Bogdał, Beata Hat, Marek Kochańczyk, Tomasz Lipniacki |
Computational Model of the Autophagy-Translation Switch | |
Paulina Szymańska |
Cell and Tissue Biophysics
Receptor-mediated endocytosis and intracellular transport: self-organization, tasks and limitations. A mathematical model approach. | |
Konstantin Novikov, Alexei Romanyukha |
Breast Cancer and TGFb signaling | |
Gianluca Ascolani |
A multiscale analysis of tissue growth and nutrient transport in vitro | |
Reuben O'Dea |
The Flatness of Lamellipodia Explained by the Interaction Between Actin Dynamics and Membrane Deformation | |
Christoph Winkler |
On the biomechanics of intestinal stem cell niche formation in vitro and in vivo | |
Peter Buske, Jens Przybilla, Markus Loeffler, Joerg Galle |
Blood Flow and Oxygen Distribution in a Simulated 3D Liver Lobule | |
Xiao Fu, Julio Belmonte, James Patrick Sluka, Maciej Swat, James Alexander Glazier |
A Model of Contractile Forces in Acto-Myosin Bundles | |
Stefanie Hirsch |
Using mathematical models to exploit the potential of skin in non-invasive drug monitoring | |
K A Jane White, Begona Delgado-Charro |
Computational Studies of B-Z transitions in DNA | |
Nam-Kyung Lee, Ah-Young Kwon |
Blood is thicker than water – Calculating the optimal hematocrit | |
Stefan Schuster, Heiko Stark |
Swimming Patterns in Zoospores | |
Fordyce A. Davidson |
Physarum Can Compute Shortest Paths | |
Vincenzo Bonifaci |
Describing and quantifying the binding pathway of Histone H1 | |
Gustavo Carrero, Carlos Contreras, Carlos Contreras, Michael J. Hendzel |
Uncovering Nuclear Diffusion Barriers in Closed Mitosis | |
Eder Zavala, Tatiana Marquez-Lago |
Modeling the Directional Growth of Aggregated Archaeal Cells | |
Viktor Milkevych, Damien Batstone |
Substrate dependend stress fibre organisation dynamics in adult stem cells | |
Carina Wollnik |
On the dome formation during Zebrafish epiboly | |
Martin Bock |
The method of additional particles for models of self-assembly in multilevel biological systems | |
Ivan A Denisov, Peter I Belobrov |
The effect of plasma membrane compartmentalization on receptor assembly dynamics | |
Andre Leier, Changjiang You, Tatiana T. Marquez-Lago, Jacob Piehler |
Mathematical modelling of VEGF-VEGFR binding and trafficking. | |
Maria Sawicka |
Mathematical modeling of mechanical cell-extracellular matrix interactions | |
Elisabeth Geraldine Rens, Roeland Merks |
Cell-To-Cell Microfluidic Interaction Models for Tissue Biophysics | |
Peter I Belobrov |
Pattern Formation in a Generalized Phyllotactic System | |
Robert Beyer |
Mechanism of The Nanodiamond – Protein Collective Aggregation | |
Peter I Belobrov |
Biomechanics of tissue movements | |
Andras Czirok |
Bio-engineering
How can we approach reaction-diffusion systems with concentrated terms on the rough border of a thin channel? | |
Marcone Correa Pereira |
MODELLING THREE-DIMENSIONAL FUNGAL GROWTH: A SPATIALLY EXPLICIT LATTICE-FREE APPROACH. | |
Guillermo Vidal Diez de Ulzurrun |
Extracting T-lymphocyte cell dynamics in biommetic microenvironments | |
Aysha Alsuwaid, Jeremy Teo Choon Meng, Yanthe E Pearson |
Dynamic Flux Balance Analysis for Modeling Lactococcus lactis Mannitol Production | |
Armando Fernandes, Rafael Costa, Paula Gaspar, Ana Neves, Susana Vinga |
Reliability theory for the prediction of osteoarthritis | |
Francis Woodhouse, Bruce Gardiner, David Smith |
Information processing in biochemical reaction networks | |
J Krishnan |
Bio-imaging
Quantification of Arthritis Progression Using Micro-CT Data | |
Carl-Magnus Svensson, Ingo Irmler, Bianca Hofmann, Hans Peter Saluz, Marc Thilo Figge |
Automated multi-cell segmentation and tracking from live bioimaging datasets | |
Yanthe E. Pearson, Jeremy Teo Choon Meng |
The plant cytoskeleton as a transportation network | |
David Breuer |
Automated Characterization of Cell Tracks Based on Local Migration Behaviour | |
Zeinab Mokhtariasl |
Modelling cerebral vasculature based on magnetic resonance angiograms | |
Krzysztof Psiuk-Maksymowicz |
Model-based outliers treatment in image-based systems biology: filtering vs. noise model | |
Sabrina Hross, Fabian Theis, Jan Hasenauer |
Minisymposia
Some issues in modeling the atherosclerosis process | |
Bérénice Grec, Bertrand Maury, Nicolas Meunier, Laurent Navoret, Annie RAOULT |
Investigation of a Nucleated-Polymerization Model applied to Polyglutamine Aggregation | |
Carola Kruse, Marie Doumic, H. Thomas Banks |
Co-evolutionary cycles in host-parasite interactions | |
Alex Best |
The effect of linked selection on invasion and survival of locally beneficial mutations | |
Simon Aeschbacher, Reinhard Buerger |
The interplay of infectivity that decreases with virulence and limited cross-immunity: (toy) models for respiratory disease evolution | |
Hans (J.A.J.) Metz |
Modelling of blood flow and blood coagulation | |
Vitaly Volpert |
Eco-evolutionary cycles of pathogen virulence under selective predation | |
Eva Kisdi |
How specificity and epidemiology drive the co-evolution of static trait diversity in hosts and parasites | |
Andy White |
COOPERATION AND SYMBIOSIS IN BIOLOGICAL EVOLUTION: THE WAYS OF GLOBAL DISSIPATION ACCELLERATION | |
Adam Moroz |
Impact of extra-cranial venous anomalies on cerebral haemodynamics. Numerical study via a global model | |
Eleuterio Francisco Toro, Lucas Omar Muller |
Relevance of the Voronoi domain partition for position-jump reaction-diffusion processes on nonuniform rectilinear lattices | |
Christian Adam Yates |
Multi-resolution stochastic reaction-diffusion and fractional-diffusion methods with applications to pattern formation, brain tumor growth, and epidemics | |
Basil Bayati |
Demographic and genetic structuring in spatial evolutionary epidemiology | |
Sylvain Gandon |
Microbiology's N-body problem: How should we estimate the rate of metabolite exchange in spatially structured populations? | |
Robert J Clegg, Rosemary J Dyson, Jan-Ulrich Kreft |
Individualised 1D haemodynamics simulations for endovascular procedures and blood flow stimulation | |
Sergey Simakov, Timur Gamilov, Yuri Ivanov |
Pharmacokinetic/Viral Kinetic modeling of early viral kinetics in different Hepatitis C virus genotypes during Alisporivir monotherapy or in combination with Peg-IFN | |
Jeremie Guedj |
Modeling Hollow Fibers Dialyzers | |
Angiolo Farina |
Multiscale model for viral kinetics in patients with HCV under direct-acting antiviral therapy | |
Dimitra Bon, Anita Kohli, Anuoluwapo Osinusi, Shyamasundaran Kottilil, Eva Herrmann |
Three-dimentional mathematical analysis of non-Newtonian blood flow and numerical simulation of its interactions in an atherosclerotic artery | |
Soumaya Boujena, Oualid Kafi, Nader El Khatib |
Where signal and noise collide: qualitative effects of stochasticity on population fluctuations | |
Karen C. Abbott |
Spatio-temporal modelling of gene regulatory networks and intracellular signalling pathways | |
Mark AJ Chaplain |
Mathematical modeling of auxin transport in root meristem of pin mutants | |
Victoria V Mironova, Fedor Kazantsev |
Collective-Risk dilemmas and Risky Climate Game | |
Maria Abou Chakra |
Benchmarking analysis methods for live cell single particle tracking using simulated microscopy | |
Martin Lindén, Johan Elf |
Tensor-structured treatment of the chemical master equation | |
Vladimir Kazeev |
Tackling the construction of probability distributions arising in Bio-Chemical networks | |
Vikram Sunkara |
Effective tensor-based methods for the solution of high-dimensional non-stationary problems with the application to the chemical master equation | |
Ivan Oseledets, Denis Kolesnikov |
Modelling of platelet-fibrin clot formation in flow with a DPD-PDE method | |
Alen Tosenberger |
Modelling and numerical simulation of cellular molecular signaling | |
Andrea Cangiani |
Mathematical modelling of intracellular protein dynamics: the importance of active transport along microtubules | |
Z. Szymanska |
Spatial stochastic simulation of intracellular pathways | |
A. Hellander |
Spatio-temporal modelling of gene regulatory networks: transcription factors, negative feedback loops and oscillatory dynamics | |
M. Sturrock |
Dynamics of p53 in single cells: A spatio-temporal reaction-diffusion PDE model for activation and regulation of p53 | |
Elias Jan, Luna Dimitrio, Jean Clairambault, Roberto Natalini |
Traveling wave like solutions to a singular model of kinase-receptor interaction on a sphere | |
Bogdan Andrzej Kazmierczak, Slawomir Bialecki |
A mathematical model of clot growth in flowing blood | |
Jevgenija Pavlova, Antonio Fasano, João Janela, Adélia Sequeira |
Optimal control applications in blood flow simulations | |
Jorge Tiago, Telma Guerra, Alberto Gambaruto, Adélia Sequeira |
Effective Parameters in Population Genetic Models with Class Structure | |
Arndt Telschow, Yutaka Kobayashi |
Towards a mathematical model for the atherosclerotic plaque formation | |
Jorge Tiago, Telma Silva, Adélia Sequeira, Rafael Santos |
Collective cell movement | |
Michael Plank |
Predicting microbial community assembly | |
William Sloan |
Metagenomics data analysis using a latent block model: application to plant-microbial communities interactions in the rhizosphere | |
Julie Aubert |
Combining kinetic modeling and transcriptomic analysis to study the resilience on a model cheese reduced ecosystem | |
Frédéric Fer, Jean-Marie Beckerich, Béatrice Laroche, Sébastien Gaucel, Julie Aubert |
Epistasis and Natural Selection Shape the Mutational Architecture of Quantitative Traits | |
Reinhard Bürger |
The effects of biocontrol on cyclic pest populations and its unexpected outcomes | |
Bret Elderd, James Reilly |
Generalized mass action systems and positive solutions of polynomial systems with parameters | |
Georg Regensburger |
Ruling out Hopf bifurcations in biochemical reaction networks | |
Casian Pantea |
Numerical treatment of chemotaxis related heterogeneous dynamics arising in cancer invasion simulations | |
N. Kolbe |
Does Organismal Complexity Favor the Evolution of Diversity? | |
Claus Rueffler |
Patterns of Species Ranges, Speciation, and Extinction | |
Aysegul Birand |
The biogeography of adaptive radiations and the geographic overlap of sister species | |
Mikael Pontarp |
Niche conservatism through species turnover | |
Jörgen Ripa |
Synergy of vacuolation and cell-cell repulsion in lumen formation | |
Sonja Boas, Roeland Merks |
Cellular Potts Models for Cell Migration | |
Marco Scianna |
Multiscale techniques in cancer modelling and treatment prediction: A Compucell3D approach | |
Gibin Powathil |
Measuring and modeling dynamics of VEGF retention in vascular patterning | |
Walter de Back |
The Cellular Potts Model in the context of Cell Surface Mechanics | |
Stan Maree |
Image-based computational studies of shear-thinning effects in the progression of cerebral aneurysms | |
Adelia Sequeira |
MATHEMATICAL ANALYSIS AND NUMERICAL APPROXIMATION OF A COUPLED SYSTEM MODELING CARDIAC ELECTROMECHANICS | |
Mostafa Bendahmane |
Time delays in stochastic models of evolutionary games | |
Jacek Miekisz |
Combinatorial Aspects of Parker’s model | |
Chris Cannings |
The optimal foraging game | |
Vlastimil Kivan |
Cross-feeding as a game | |
Torbjörn Lundh |
Game theory and adaptation of reproductive phenology to climate change in birds with dominance hierarchies | |
Jacob Johannsson |
Evolutionary Exploration of the Finitely Repeated Prisoners Dilemma - The Effect of Out-of-Equilibrium Play | |
Kristian Lindgren |
Natural selection under limited population growth. Replicator dynamics and eco-evolutionary feedback | |
Krzysztof Argasinski |
Efficient data-driven simulation of infection spread in the Swedish cattle population | |
Stefan Widgren |
Inferring global network properties from egocentric data with applications to epidemics | |
Tom Britton |
Modeling animal disease spread: including several paths of disease spread in a bayesian data-driven approach | |
Uno Wennergren |
Interface instabilities in bacterial biofilms | |
Laoshen Li |
The role of quorum-sensing architecture in determining bacterial population behaviour | |
Sara Jabbari |
An approach for pressure-induced mathematical modeling of bacterial pattern formation | |
Aenne Oelker |
Mathematical modelling and numerical simulations of bacterial pattern formation in terms of a complex reaction-diffusion-system | |
Thomas Horger, Christina Kuttler, Barbara Wohlmuth |
Moment-dynamics models for cell biology processes | |
Ruth Baker |
Modeling the Dynamics of Tumor Heterogeneity | |
Ruchira Datta |
Dynamics of diversity in spatially evolving populations | |
Jasmine Foo |
Understanding the relative roles of intrinsic and extrinsic heterogeneity in glioblastoma | |
Jill Gallaher |
A Mathematical Exploration of the Development and Therapeutic Implications of Anti-Cancer Drug Resistance | |
Jan Gevertz |
Clonal evolution of human intestinal stem cell niches | |
Marnix Jansen |
Radiation-induced bystander signals: Role of spatial effects in radiation response | |
Gibin Powathil |
Quantifying the effect of spatially varying factors of resistance to radiation therapy in primary brain tumors: predictions from a patient-specific model | |
Russell C. Rockne |
Tracking the invisible: a probabilistic approach to field cancerization in head and neck carcinoma | |
Marc Ryser |
Rapid adaptation from standing variance and de novo mutation: a general deterministic approximation | |
Guillaume Martin |
Evolutionary rescue of a pathogen: emergence of viral drug resistance | |
Helen Alexander |
Modeling Distribution of Reads from Leukemic Cells DNA through Mixture of Truncated Poisson Distributions | |
Nicolas Flores Castillo |
Revising the specialist and generalist predation hypotheses: examples from the Arctic | |
Frederic Barraquand, John-André Henden, Olivier Gilg, Rolf A Ims, Nigel G Yoccoz |
Nonlinearities in continuous-space moment equation models: possible insights from Taylor expansions | |
Frederic Barraquand, David Murrell |
Evolutionary diversification in finite and in subdivided populations | |
Florence Debarre |
Low-dimensional representations of stochastic dynamics on discrete structures | |
Thomas Allan House |
Message passing and moment closure for Susceptible-Infectious-Removed (SIR) epidemic dynamics on networks | |
Kieran Sharkey |
Spatial correlations in a multi-species model | |
Deborah C Markham |
Models for regeneration: reconciling pattern formation and growth | |
Hans Meinhardt |
Stem Cells and Regeneration: Feedback, Niche, and Epigenetic Regulation | |
Qing Nie |
A mathematical model for cell differentiation, as an evolutionary and regulated process | |
Fred Vermolen |
A quantitative data-driven model of cell proliferation and cell migration in the axolotl spinal cord regeneration | |
Osvaldo Chara |
Effect of various doses of alisporivir alone or in combination with Peg‐IFN on the early viral kinetics: a modeling approach | |
Jérémie Guedj, Thi Huyen Tram Nguyen, France Mentré, Micha Levi, Nikolai Naoumov, Jing Ju |
Modelling ribavirin mode of action in a specifically designed clinical trial in patients with hepatitis C | |
Eva Herrmann |
Modeling HCV kinetics in vivo and in vitro indicates that the liver plays a role in HCV clearance | |
Harel Dahari |
Spatial spread of hepatitis C virus in vivo and in vitro – analyzing single cell dynamics | |
Fredrik Graw, Harel Dahari, Ruy M. Ribeiro, Alan S. Perelson |
A vRNA Structured Population Model of Hepatitis C Virus Dynamics | |
Wojciech Krzyzanski, Xavier Woot de Trixhe, Filip De Ridder, An Vermeulen |
Mechanism-based analysis of drug combination effects on HCV replication in Huh-7 cells | |
Shingo Iwami |
Size matters: Mathematical modelling of the type‐1 interferon induction | |
Diana Clausznitzer, Lars Kaderali |
Mathematical models of immune responses to hepatitis B virus infection | |
Stanca Ciupe, Ruy Ribeiro, Alan Parelson |
A predator-prey model with time delay and the Mackey-Glass attractor | |
Gail Wolkowicz |
Stabilizing population cycles with adaptive limiter control | |
Frank Hilker |
Retinal Plasticity: Mathematical modelling of positional information of sub-apical neurons | |
GEORGIOS LOLAS |
Effects of dispersal and plant genotype on a cyclic herbivore population | |
Frederic Barraquand, Karen Abbott, Bret Elderd, Rebecca Tyson, Christina Cobbold |
Stochastic processes of mutation, selection and growth in cancer: models and data | |
Marek Kimmel, Alexandra Jilkine, Cristian Tomasetti, Thomas McDonald, Tomasz Wojdyla |
Coupling biochemical models to physics of transport in leaf physiology | |
Ansgar Bohmann, Andrés Chavarría-Krauser |
Modeling of Zinc Uptake and Transport in Plant Roots | |
Juliane Claus, Andrés Chavarría-Krauser |
Understanding the paradoxical effects of katanin microtuble severing on the self-organisation of the plant cortical array | |
Eva E. Deinum, Simon H. H Tindemans, Bela M. Mulder |
Soil-Root Interactions : Observations and modeling with a specific focus on water uptake | |
Claude Doussan |
Modelling Root Growth with PDE. The C-root model | |
Yves Dumont, Thierry Fourcaud, Emilie Peynaud |
Modeling the mechanical regulation of morphogenesis in plants | |
Christophe Godin |
Computational Modelling of Planar Cell Polarity in the Arabidopsis Root Epidermis | |
Bettina Greese, Markus Grebe, Henrik Jönsson |
Understanding plant shoot development - a Computational Morphodynamics approach | |
Henrik Jönsson |
Density-based approaches to interface models and data in root biology | |
Dimitris Kalogiros, Michael O. Adu, Xavier Draye, Mariya Ptashnyk, A. Glyn Bengougha, Lionel X. Dupuy |
Image-based plant phosphate uptake modelling: a case study for root hairs using synchrotron X-ray CT imaging | |
Sam D. Keyes, Keith R. Daly, Neil Gostling, Alan Marchant, Ian Sinclair, Tiina Roose |
At the crossroads: how auxin biases positioning of asymmetric cell divisions in the root meristem | |
Athanasius F M (Stan) Marée |
Modeling a Plant Cell Wall: interactions between mechanics and biochemistry | |
Brian Seguin, Mariya Ptashnyk |
The effect of geometry on morphogenesis in the Arabidopsis embryo | |
Richard S. Smith, George Bassel, Gabriella Mosca, Pierre Barbier de Reuille, Saiko Yoshida, Dolf Weijers |
Introduction to SPP-models and description of the problem | |
Daniel Strömbom |
Spatial "self-propelled particle" and non-spatial "reaction-network" models explain locust swarm cohesion | |
Christian Yates |
Swarming at Mesoscopic Scales - The role of fluctuations | |
Pawel Romanczuk |
Bifurcation dynamics in models for self-organised biological aggregations | |
Raluca Eftimie |
Control Theory Based Approaches to Dynamic Network Analysis | |
James Anderson |
Ultrasensitivity and concentration robustness in bifunctional enzyme systems | |
Ronny Straube |
Ultrasensitivity in phosphorylation cycles with little substrate | |
Bruno Martins, Peter S. Swain |
Robustness of MAPK signalling at various expression levels of Erk1/2 | |
Franziska Witzel, Raphaela Fritsche-Guenther, Anja Sieber, Ricarda Herr, Nadine Schmidt, Sandra Braun, Tilman Brummer, Christine Sers, Nil Blütghen |
Digital Clock Modelling | |
Ozgur E Akman |
The sensitivity of oscillatory properties | |
Katharina Baum, Jana Wolf |
Encoding of stimulus intensities by sequences of Ca2+ spikes | |
Kevin Thurley, Stephen C. Tovey, Gregor Moenke, Victora L. Prince, Abha Meena, Andrew P. Thomas, Alexander Skupin, Colin W. Taylor, Martin Falcke |
The effect of T-cell homeostasis on solid and liquid tumors | |
Mark Robertson-Tessi, Derek Park, Adam Mailloux, Kimberly Luddy, Pearlie Burnette, Alexander Anderson |
A mathematical model for effect of tumor stroma on rate of metastasis formation | |
Ardith El-Kareh, Timothy Secomb |
Chaste: An open source C++ library for computational physiology and biology | |
Alexander Fletcher |
Modeling tissues using CompuCell3D | |
Maciej Swat |
EPISIM Platform: Graphical multi-scale modeling and simulation of multicellular systems | |
Thomas Sütterlin |
CellSys: Modular software for physics-based tissue modelling in 3D | |
Tim Johann |
Modeling animal tissues in VirtualLeaf: Towards an off-lattice Cellular `Potts’ model | |
Roeland Merks |
Biocellion: Accelerating multicellular biological simulation | |
Ryan Tasseff |
Morpheus: User-friendly modeling of multicellular systems | |
Walter de Back |
Modeling the cyanobacterial circadian clock | |
Sophie De Buyl |
Simple numerical techniques for reaction-diffusion on general geometry | |
Colin Macdonald |
Mathematical modelling of the plant circadian clock | |
Mirela Domijan |
Pattern formation in morphogenesis on evolving biological surfaces: Theory, numerics and applications | |
Anotida Madzvamuse |
Solving diffusion equations on evolving surfaces defined by biological images | |
Tom Ranner |
Multiscale modelling of cancer cell motility: a predictive model of adhesions, blebbing, and spreading | |
Melda Tozluoğlu |
Biological signal processing with a genetic toggle switch | |
Georg Fritz |
Pulse dynamics in two component, singularly perturbed reaction-diffusion equations | |
Frits Veerman |
Moving interface and free boundary problems that arise in the study of cell motility | |
Chandrasekhar Venkataraman |
Are circadian clocks limit cycle oscillators? | |
Didier Gonze |
Role of Noise in Multistable Dynamics of a non-adiabatic Repressilator | |
Evgeny Volkov, Ilya Potapov, Boris Zhurov |
Robust Concentration and Frequency Control in Oscillatory Homeostats | |
Peter Ruoff |
Conditions for oscillations in the NF-kB pathway | |
Jana Wolf |
Tensor-based parametric analysis of stochastic genetic regulatory network | |
Shuohao Liao |
Solution of the chemical master equation by the separation of variables and alternating optimization methods | |
Sergey Dolgov |
Linking adaptive dynamics to neutral variation | |
Régis Ferrière |
An edema‐ based model for diffuse low‐grade gliomas under radiotherapy | |
M. Badoual |
Investigation of the effect of phenotypic plasticity on tumor growth | |
Katrin Boettger |
Linear dependency between residual tumor fraction and regression probability can provide decision support after partial resection of pilocytic astrocytoma | |
Thomas Buder |
The influence of phenotypic switching on tumour growth rate and cell density profiles | |
Philip Gerlee |
Modeling dose‐painting effects in radiotherapy by means of an agent based model | |
Juan Carlos López Alfonso |
In‐silico glioma models: what can we take advantage for the clinical practice? | |
Alicia Martínez‐González |
A data‐driven calibration of a nonlinear mechanistic model for DNA damage and repair: applications to radiosurgery and heavy ion irradiation treatment for glioblastoma | |
Russel Rockne |
Quantifying changes in glioma biology with treatment using modeling of edema formation and clinical imaging | |
Kristin R. Swanson |
Cellular automaton models for collective cell behaviour | |
Andreas Deutsch |
Emergence of biological-like systems, e.g. Brownian motor, by reduction of effective temperature | |
Alex Fiegel |
How to Understand Morphogen Gradients Development during Biological Development | |
Anatoly B. Kolomeisky |
A Path-based Approach to Random Walks on Landscapes, with Applications to How Proteins Evolve New Function | |
Michael Manhart |
Emergence of criticality in living systems through adaptation and evolution: Practice Makes Critical | |
Amos Maritan |
Statistical mechanics of nucleosome crowding in yeast | |
Alexandre Morozov |
Toxin-Antitoxin Battle in Bacteria | |
Namiko Mitarai |
Moving at the air-water interface | |
Elie RAPHAEL |
Adhesion of membranes via receptor-ligand complexes: Binding cooperativity, domain formation and line tension effects | |
Bartosz Rozycki |
Regulating Looping in | |
Anirvan Sengupta |
Mechanistic models of multicellular computation | |
David Swab |
Spatial heterogeneity in drug concentrations can facilitate the emergence of resistance to cancer therapy | |
Feng Fu |
An evolutionary model of micrometastatic progression: are driver mutations in the primary tumor important? | |
Christopher McFarland |
Cell Trafficking Evolutionary Model for Metastatic Breast Cancer | |
Jeffrey West |
One-dimensional model of cytoskeleton dynamics: application to interstitial migration | |
M.T. Sanchez |
Molecular mechanisms underlying Xenopus retinal stem cell proliferation | |
MURIEL PERRON |
On the understanding of avian photoreceptor mosaics development | |
HARALAMPOS HATZIKIROU |
Retinal angiogenesis and vascular pathology in response to hypoxia | |
LASSE JENSEN |
A Combined Experimental and Numerical Study of Guidance Cues in the Developing Murine Retina | |
STEVEN MCDOUGALL |
The role of VEGF-C and CCR7/CCL21 in Tumor Lymphangiogenesis. | |
GEORGIOS LOLAS |
Mechanisms of lymphangiogenesis and metastasis | |
Yihai Cao |
Mathematical modeling predicts exponential growth of metastases in lymphatic vessels | |
MIHAELA SKOBE |
Dendritic cell chemotaxis in physiological matrices in well-defined 3D gradients reveals differential response to CCL21 vs. CCL19 | |
Ulrike Haessler |
Inflammatory lymphangiogenesis and identification of new lymphangiogenic mediators | |
Cornelia Halin |
Role of the extracellular matrix and lymphatics in fluid volume regulation | |
Helge Wiig |
Stochastic Modeling of Prion Protein Dynamics and Transmission in Yeast | |
Suzanne Sindi |
Distinguishing between mean-field, moment dynamics and stochastic descriptions of birth death movement processes | |
Matthew Simpson |
Clinically Relevant Mathematical Models of Cancer | |
Alexander R.A Anderson |
Optimization of radiation schedules for proneural gliomas via mathematical modeling | |
Kevin Leder, Ken Pitter, Eric Hollande, Franziska Michor |
Out with the new, in with the old | |
David Basanta, Arturo Araujo, Color Lynch, Leah Cook, Shilpa Gupta, Jasreman Dhillon, Jong Park, Julio Pow Sang |
Mathematical Neuro-Oncology: Translating Patient-specific Mathematical Modeling of Brain Tumors to Clinical Care | |
Kristin Swanson |
Within-tumour diversity as a universal biomarker of prognosis | |
Trevor Graham |
Evolutionary games in cancer therapy | |
Robert Gatenby |
Simple numerical techniques for reaction-diffusion on general geometry. | |
Colin Mcdonald |
Power spectra of stochastic reaction-diffusion equations on stochastically growing domains | |
Thomas Wooley |
A Computational Model for Eukaryotic Cell Migration and Chemotaxis | |
John MacKenzie, R.H Insall, M Nolan |
Pattern formation on curved surfaces: an analytical exploration | |
Frist Veerman |
Plasticity of cancer cell migration: Extracellular matrix derives the optimisation of blebbing, adhesions, and spreading. | |
Melda Tozluoglu |
Stochastic approaches for understanding the impact of antibacterial drugs on bacteria population dynamics | |
Diana David-Rus |
Emergence of Modularity in Biology | |
Michael Deem |
Thermodynamic limits on noisy cellular sensing | |
Sorin Tanase-Nicola |
Adhesion of membranes via receptor-ligand complexes: Binding cooperativity, domain formation and line tension effects | |
Bartosz Ryzycki |
Transcriptional bursting and bacterial adaptation | |
Ovidiu Radulescu, Cathy Royer, Nathalie Declerck |
Uncovering the Natural History of Metastatic Cancer from Autopsy Data | |
Leonid Hanin |
The specificity-abundance relationship in microbial communities. | |
Mahendra Mariadassou, Samuel Pichon, Dieter Ebert |
Energetics and evolution. | |
T.P. Curtis, L. Øvreås, W:T Sloan |
Metagenomic data analysis and integration in a functional population model of fiber degradation by the human intestinal microbiota. | |
Béatrice Laroche, Marion Leclerc, Sébastien Raguideau |
Combining kinetic modeling and transcriptomic analysis to study the resilience on a model cheese reduced ecosystem | |
Frédéric Fer, Jean-Marie Beckerich, Sébastien Gaucel, Julie Aubert, Béatrice Laroche |
Analysis of open chemical reaction networks governed by mass-action kinetics | |
Bayu Jayawardhana |
Elimination of Intermediate Species in the Stochastic Reaction Networks | |
Daniele Cappelletti |
Ruling out Hopf bifurcations in biochemical reaction networks | |
Casian Pantea |
Complex concentration coupling in chemical reaction networks | |
Zoran Nikoloski, Jost Neigenfind |
Graph-theoretic conditions for multistationarity for mass-conserved biochemical networks | |
Maya Mincheva |
Implicit dose-response curves | |
Mercedes Pérez Millán |
A multi-locus, haploid-selection, symmetric-viability model | |
Jeffrey Chasnov |
Multidimensional models of rapid adaptation to shifting environmental gradients. | |
Frederic Guillaume |
A two-locus model of spatially varying stabilizing or directional selection on a quantitative trait | |
Ludwig Geroldinger |
How can genetic interactions evolve in response to migration load? | |
Stephen Proulx |
Community dynamics and the evolution of dispersal | |
Francois Massol |
"The biogeography of adaptive radiations and the geographic overlap of sister species" | |
Mikael Pontarp |
Rapid adaptation from standing variance and de novo mutation: a general deterministic approximation | |
Guillaume Martin |
Epidemiological feedbacks aect evolutionary emergence of pathogens | |
Matthew Harteld, Samuel Alizon |
Insights into the evolution of drug resistance from simple models | |
Troy Day |
Modeling and simulation of low grade urinary bladder carcinoma | |
Svetlana Bunimovich |
Numerical treatment of chemotaxis related heterogeneous dynamics arising in cancer invasion simulations | |
N. Kolbe, N. Sfakianakis, Lukacova Medvidova, N. Hellman, J. Katuchova |
Mathematical models of cancer invasion of tissue: local and nonlocal interactions | |
Cristian Morales Rodrigo |
On a multiscale model involving cell contractivity and its e_ects on tumor invasion | |
Christian Stinner |
Computational modeling to assess guidelines, risk factors and cushions addressing sitting-acquired pressure ulcers | |
Amit Gefen |
Variance-reduced simulation of individual-based models for tumor growth | |
Annelies Lejon, Giovanni Samaey |
Mathematical modelling and numerical simulations of actin dynamics in the eukaryotic cell | |
Anotida Madzvamuse |
Unraveling the occurrence of fracture non-unions with a multiscale bioregulatory model | |
Aurélie Carlier, Nick van Gastel, Geert Carmeliet, Hans Van Oosterwyck, Liesbet Geris |
Mathematical modelling of wound infection implications to delayed wound healing | |
Etelvina Javierre, Fred Vermolen |
On minimizers of the bending energy of two-phase biomembranes | |
Marco Veneroni |
Radially Projected Finite Element Method on Evolving Surfaces | |
Necibe Tuncer |
Identifying Optimal Treatment Protocols for the Treatment of a Bacterial Infection in a Chronic Ischemic Wound Using Hyperbaric Oxygen Therapy | |
Richard Schugart |
Hybrid cell-based modeling of mechanical cell-matrix feedback during collective cell behavior | |
Roeland M.H Merks, Ren_e F.M. van Oers, Elisabeth G. Rens |
Efficient data-driven simulation of infection spread in the Swedish cattle population | |
Stefan Widgren, Pavol Bauer, Stefan Engblom |
Pathogen spread and control on the network of French cattle movements through coupling of intra- and inter-herd models | |
Elisabeta Vergu, Pauline Ezanno, B. L. Dutta |
"Relevance of the Voronoi domain partition for position-jump reaction-diffusion processes on nonuniform rectilinear lattices" | |
Christian Yates |
Mesoscopic Stochastic Modeling and the Diffusion Operator | |
Stefan Engblom |
Stochastic simulation of di ffusion on unstructured meshes via first exit times. | |
Lina Meinecke |
Modelling HIV virulence evolution in the context of immune escape | |
Christiaan H. van Dorp, Rob J. de Boer, Michiel van Boven |
Disentangling human tolerance and resistance against HIV | |
Roland R. Regoes, Paul J. Mclaren, Manuel Battegay, Enos Bernasconi, Alexandra Calmy, Huldrych F. Günthard, Matthias Hoffmann, Andri Rauch, Amalio Telenti, Jacques Fellay |
The coevolution of human antiviral protein APOBEC3G and HIV protein Vif: A theoretical study | |
Akira Sasaki |
Immunology and epidemiology of hepatitis C virus: plenty of data for a nested model approach. | |
Fabio Luciani |
Incorporating immunological dynamics in transmission models of varicella zoster virus (VZV) and cytomegalovirus (CMV) | |
Michiel van Boven, Alies van Lier, Marjolein Korndewal, Jacco Wallinga, Hester de Melker |
Identifying host immune factors that drive epidemic dynamics in a multi-scale model of tuberculosis | |
Giorgio Guzzetta, Marco Ajelli, Denise Kirschner, Stefano Merle |
Combining a within host model for immune response and waning immunity with a population level transmission model | |
Wilfred de Graaf |
Backward bifurcations in a model coupling within-host and between-host dynamics | |
Zhilan Feng |
Title | |
Andrea Pugliese, Carmela Sinisgalli, Alberto Gandolfi |
Investigation of a Nucleated-Polymerization Model applied to Polyglutamine Aggregation | |
Carola Kruse, Marie Doumic-Jauffret, H.Thomas Banks |
Mathematical Modeling of Prion Aggregate Dynamics and Transmission in Yeast | |
Suzanne S. Sindi |
Enzyme-Limited Nucleated Polymerization Model of Prion Aggregation | |
Jason Karl Davis, Suzanne S. Sindi |
Simulation of cell mechanics in a micropipette aspiration experiment using a highly detail model | |
Paul van liedekerke, Johannes Neitsch, Bart Smeets, Tim Odenthal, Herman Ramon, Dirk Drasdo |
Evolution of senescence in heterogeneous landscapes | |
Olivier Cotto |
Plenary talk
Statistics for networks with a view towards neuroscience | |
Mathisca de Gunst |
Dynamics and design principles in cell cycles, clocks and signals | |
David Rand |
Modelling the Kinetics of Protein Polymerization in Amyloid Diseases | |
Marie Doumic |
Estimating R_0 in emerging diseases: the effect of population structure is small | |
Tom Britton |
Multiple merger coalescents in population genetics | |
Johannes Birkner |
Counting fossils – do you really need mathematics for that? | |
Mikael Fortelius, Stefan Geritz, Mats Gyllenberg, Jaakko Toivonen |
Quantifying clonal evolution in the human colon | |
Trevor A Graham |