Presentations and Authors

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Evolution and populations genetics

Brownian motion on the Yule tree: variance of the sample variance
Serik Sagitov
Direct evidence of the strong co-evolution of somatic and organelle genomes
Michael Sadovsky, Anna Chernyshova
Tree-free phylogenetic comparative methods: what can we say about a species' trait without observing the phylogeny
Krzysztof Bartoszek, Serik Sagitov
Clines With Partial Panmixia In An Environmental Pocket
Linlin Su
Do sheep cheat themselves by mounting weak immune responses: an adaptive dynamics approach
Daniel Balaz, Christina A Cobbold, Michael J Stear, Joaquín Prada Jiménez de Cisneros, Rodney Beard, Louise Matthews
Spatial model of stress-induced transposon proliferation.
Mateusz Kitlas, Michał Startek, Arnaud Le Rouzic, Dariusz Grzebelus, Anna Gambin
Continuous approximations of Discrete Processes
Fabio Chalub, Max Souza
Long-scale structures in genomes
Michael Sadovsky, Xenia Nikitina, Eugene Bushmelev
Super-symmetry in genomes and its evolution
Michael Sadovsky, Yaroslav Grebnev
The impact of sexual vs. asexual reproduction on transposon proliferation dynamics
Krzysztof Gogolewski, Anna Gambin, Dariusz Grzebelus, Arnaud Le Rouzic, Michał Startek
Effect of Neutral Spaces in a Markov Chain Model of Bacterial Evolution
Kush Chandra Khosla, Dan Nichol, Jacob Scott
On the existence and stability of equilibrium probability measures in Gaussian mutator models with environmental stress within Fisher's geometric framework.
Michał Piotr Startek, Arnaud Le Rouzic, Anna Gambin
Multiscaling Modelling in Evolutionary Dynamics
Max Souza
Adaptive gene introgression after secondary contact
Hildegard Uecker, Derek Setter, Joachim Hermisson

Developmental Biology

Unravelling the rules of multicellular migration during development with models and experiments.
Linus J Schumacher
A parameter study of a computational angiogenesis model suggests that limited Apelin sensitivity enables tip cells to lead sprouts
Margriet Palm, Marchien Dallinga, Erik van Dijk, Ingeborg Klaassen, Reinier Schlingemann, Roeland Merks


Mathematical modeling predicts exponential growth kinetics for metastases in the lymphatic vessels in the absence of vascularization
Ruth Elizabeth Griswold, Simona Podgrabinska, Suvendu Das, Boyce E. Griffith, Charles S. Peskin, Mihaela Skobe
Cell migration modeling and data analysis in lung cancer
Damian Stichel
Computer Simulation of the Metastatic Progression and Treatment Interventions
Anja Bethge, Udo Schumacher, Gero Wedemann
A systems approach to studying collective migration of cancer cells
Alistair Mark Middleton, Damian Stichel, Franziska Matthaeus
Towards patient-specific biology-driven heterogeneous radiation planning: using a computational model of tumor growth to identify novel radiation sensitivity signatures.
Jacob Gardinier Scott, Alexander G Fletcher, Claire L Timlin, David Basanta, Alexander R A Anderson, Philip K Maini
Controllability of models of anticancer combined therapy with multiple delays in control.
Andrzej Swierniak

Population Dynamics and Conservation Biology

Intraspecific competition models considering two resources
Nora Stahnke
Period-length estimate of Lyapunov exponent for probing transient chaos in model of population dynamics
Katarzyna Buszko, Krzysztof Stefański


Niche theory for a complicated world
Géza Meszéna, György Barabás, András Szilágyi
Games of Corruption: How to Suppress Illegal Logging.
JoungHun Lee, Karl Sigmund, Ulf Dieckmann, Yoh Iwasa
Evolutionary stability and geographic variation of pollination networks
Arndt Telschow, Shoko Sakai


Combining statistical and dynamic modelling approaches to within-host analysis of Porcine Reproductive and Respiratory Syndrome (PRRS) virus infections
Zeenath Islam, Stephen C Bishop, Nicholas J Savil, Raymond R. R. Rowland, Joan K Lunney, Benjamin Trible, Andrea Doeschl-Wilson
End of an SIR epidemic on a random network
Pieter Trapman, Ana Serafimović
Vector-borne disease dynamics with host circulation
Max Souza
Influence of Climate Variables on Scorpion Envenomation
Schehrazad SELMANE
Optimal treatment- and diagnostic strategies in the context of ‘treatment for prevention’ against HIV-1 in resource-rich and -poor settings
Sulav Duwal, Stefanie Winkelmann, Christof Schütte, Max von Kleist


Limit Theorems for Renyi Entropy and Divergence with Applications to DNA Diversity Analysis
Michal Tadeusz Seweryn


A Mathematical Model for the Interaction of the Proteins MMP-1, TIMP-1, and ECM in a Wound
Hannah Pennington, Nitin Krishna, Richard Schugart, Canaan Coppola
Model of the dynamics of food intake, body weight and energy expenditure in rats
Marine Jacquier, Fabien Crauste, Christophe Soulage, Hédi Soula
Integrative modelling and experimental validation of ammonia detoxification after drug induced liver damage
Geraldine Celliere, Ahmed Ghallab, Sebastian Henkel, Stefan Hoehme, Freimut Schliess, Sebastian Zellmer, Jan Hengstler, Dirk Drasdo
Alessandro Bolli, Armindo Salvador

Regulatory Networks

Noise propagation in enzymatic reactions under transcriptional repression
Diego A Oyarzún, Jean-Baptiste Lugagne, Guy-Bart V Stan
Sparsity promoting Bayesian parameter estimation and uncertainty quantification. Application to the gap gene system of Drosophila melanogaster.
Nikolaos Sfakianakis, Martin Simon
A Tropical Method based on Newton Polygon Approach for Algebraic Analysis of Biochemical Reaction Networks
Satya Swarup Samal, Ovidiu Radulescu, Dima Grigoriev, Holger Fröhlich, Andreas Weber
Early stage dynamics of miRNA-driven FFL depends upon miRNA action
Alexander M. Samsonov, Maria A. Duk, Maria G. Samsonova
Mathematical Analysis and Joint Modeling of the M2 Receptor-dependent Signaling And Secondary Messenger Network in CHO Cells
Benjamin Engelhardt, Ramona Schrage, Christian Tränkle, Klaus Mohr, Maik Kschischo, Holger Fröhlich
Logic-based models and ODEs - a bidirectional modeling approach
Claudia Stötzel, Firdevs Topcu-Alici, Susanna Röblitz, Heike Siebert
Stochastic model of gene expression
Weronika Siwek
Gianluca Selvaggio, Pedro M. B. M. Coelho, Armindo Salvador
Mathematical modeling of interactions between HSF and NFkB pathways
Jaroslaw Smieja, Malgorzata Kardynska
Mathematical models of mi-RNA dependent gene regulation in experimental procedures
Jaroslaw Smieja, Marzena Dolbniak
Computational Model of the Autophagy-Translation Switch
Paulina Szymańska

Cell and Tissue Biophysics

Blood Flow and Oxygen Distribution in a Simulated 3D Liver Lobule
Xiao Fu, Julio Belmonte, James Patrick Sluka, Maciej Swat, James Alexander Glazier
Blood is thicker than water – Calculating the optimal hematocrit
Stefan Schuster, Heiko Stark
Mathematical modelling of VEGF-VEGFR binding and trafficking.
Maria Sawicka


Reliability theory for the prediction of osteoarthritis
Francis Woodhouse, Bruce Gardiner, David Smith


Quantification of Arthritis Progression Using Micro-CT Data
Carl-Magnus Svensson, Ingo Irmler, Bianca Hofmann, Hans Peter Saluz, Marc Thilo Figge


Individualised 1D haemodynamics simulations for endovascular procedures and blood flow stimulation
Sergey Simakov, Timur Gamilov, Yuri Ivanov
Tackling the construction of probability distributions arising in Bio-Chemical networks
Vikram Sunkara
Mathematical modelling of intracellular protein dynamics: the importance of active transport along microtubules
Z. Szymanska
Spatio-temporal modelling of gene regulatory networks: transcription factors, negative feedback loops and oscillatory dynamics
M. Sturrock
A mathematical model of clot growth in flowing blood
Jevgenija Pavlova, Antonio Fasano, João Janela, Adélia Sequeira
Optimal control applications in blood flow simulations
Jorge Tiago, Telma Guerra, Alberto Gambaruto, Adélia Sequeira
Towards a mathematical model for the atherosclerotic plaque formation
Jorge Tiago, Telma Silva, Adélia Sequeira, Rafael Santos
Predicting microbial community assembly
William Sloan
Cellular Potts Models for Cell Migration
Marco Scianna
Image-based computational studies of shear-thinning effects in the progression of cerebral aneurysms
Adelia Sequeira
Message passing and moment closure for Susceptible-Infectious-Removed (SIR) epidemic dynamics on networks
Kieran Sharkey
Image-based plant phosphate uptake modelling: a case study for root hairs using synchrotron X-ray CT imaging
Sam D. Keyes, Keith R. Daly, Neil Gostling, Alan Marchant, Ian Sinclair, Tiina Roose
Modeling a Plant Cell Wall: interactions between mechanics and biochemistry
Brian Seguin, Mariya Ptashnyk
The effect of geometry on morphogenesis in the Arabidopsis embryo
Richard S. Smith, George Bassel, Gabriella Mosca, Pierre Barbier de Reuille, Saiko Yoshida, Dolf Weijers
Introduction to SPP-models and description of the problem
Daniel Strömbom
Ultrasensitivity and concentration robustness in bifunctional enzyme systems
Ronny Straube
Ultrasensitivity in phosphorylation cycles with little substrate
Bruno Martins, Peter S. Swain
Robustness of MAPK signalling at various expression levels of Erk1/2
Franziska Witzel, Raphaela Fritsche-Guenther, Anja Sieber, Ricarda Herr, Nadine Schmidt, Sandra Braun, Tilman Brummer, Christine Sers, Nil Blütghen
Encoding of stimulus intensities by sequences of Ca2+ spikes
Kevin Thurley, Stephen C. Tovey, Gregor Moenke, Victora L. Prince, Abha Meena, Andrew P. Thomas, Alexander Skupin, Colin W. Taylor, Martin Falcke
A mathematical model for effect of tumor stroma on rate of metastasis formation
Ardith El-Kareh, Timothy Secomb
Modeling tissues using CompuCell3D
Maciej Swat
EPISIM Platform: Graphical multi-scale modeling and simulation of multicellular systems
Thomas Sütterlin
Quantifying changes in glioma biology with treatment using modeling of edema formation and clinical imaging
Kristin R. Swanson
Regulating Looping in
Anirvan Sengupta
Mechanistic models of multicellular computation
David Swab
One-dimensional model of cytoskeleton dynamics: application to interstitial migration
M.T. Sanchez
Mathematical modeling predicts exponential growth of metastases in lymphatic vessels
Stochastic Modeling of Prion Protein Dynamics and Transmission in Yeast
Suzanne Sindi
Distinguishing between mean-field, moment dynamics and stochastic descriptions of birth death movement processes
Matthew Simpson
Mathematical Neuro-Oncology: Translating Patient-specific Mathematical Modeling of Brain Tumors to Clinical Care
Kristin Swanson
Energetics and evolution.
T.P. Curtis, L. Øvreås, W:T Sloan
Numerical treatment of chemotaxis related heterogeneous dynamics arising in cancer invasion simulations
N. Kolbe, N. Sfakianakis, Lukacova Medvidova, N. Hellman, J. Katuchova
On a multiscale model involving cell contractivity and its e_ects on tumor invasion
Christian Stinner
Variance-reduced simulation of individual-based models for tumor growth
Annelies Lejon, Giovanni Samaey
Identifying Optimal Treatment Protocols for the Treatment of a Bacterial Infection in a Chronic Ischemic Wound Using Hyperbaric Oxygen Therapy
Richard Schugart
The coevolution of human antiviral protein APOBEC3G and HIV protein Vif: A theoretical study
Akira Sasaki
Andrea Pugliese, Carmela Sinisgalli, Alberto Gandolfi
Mathematical Modeling of Prion Aggregate Dynamics and Transmission in Yeast
Suzanne S. Sindi
Enzyme-Limited Nucleated Polymerization Model of Prion Aggregation
Jason Karl Davis, Suzanne S. Sindi
Simulation of cell mechanics in a micropipette aspiration experiment using a highly detail model
Paul van liedekerke, Johannes Neitsch, Bart Smeets, Tim Odenthal, Herman Ramon, Dirk Drasdo