Presentations and Authors


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Evolution and populations genetics

Evolution of condition-dependent immigration
Mats Gyllenberg, Eva Kisdi, Helene Weigang
Rate of adaptation in sexuals and asexuals: A solvable model of the Fisher-Muller effect
Su-Chan Park, Joachim Krug
Repair and not segregation of damage is the optimal unicellular ageing strategy
Robert J Clegg, Rosemary J Dyson, Jan-Ulrich Kreft
Modeling the impact of selection in protein coding genes
Carina Farah Mugal, Ingemar Kaj
Measures of natural selection in protein coding genes
Carina Farah Mugal, Ingemar Kaj
Spatial model of stress-induced transposon proliferation.
Mateusz Kitlas, Michał Startek, Arnaud Le Rouzic, Dariusz Grzebelus, Anna Gambin
Effect of Neutral Spaces in a Markov Chain Model of Bacterial Evolution
Kush Chandra Khosla, Dan Nichol, Jacob Scott
Quantifying the effects of adaptation on genealogies
Taylor Austin Kessinger
The Right Word in the Right Place? Using an evolutionary model to link codon usage bias to an organism’s fitness.
Jan-Hendrik Trösemeier, Susanne Lipp, Holger Lößner, Ina Koch, Christel Kamp

Developmental Biology

A quantitative mechanical model of developing epithelial sheets
Jochen Kursawe
A parameter study of a computational angiogenesis model suggests that limited Apelin sensitivity enables tip cells to lead sprouts
Margriet Palm, Marchien Dallinga, Erik van Dijk, Ingeborg Klaassen, Reinier Schlingemann, Roeland Merks
The mechanical and the neurogenic hypothesis for fingerprint formation
Michael Kücken
The tool to study plant hormone auxin distribution in the plant root
Fedor Kazantsev, Victoria V Mironova

Cancer

Normal wound healing and tumor angiogenesis as a game of competitive inhibition
Irina Kareva
A modelling framework for elucidating the interplay between drug transport and cellular effects in tumours
J Krishnan
On a nonstandard numerical algorithm for a mathematical model of cancer invasion
Mikhail Kolev

Population Dynamics and Conservation Biology

The coupled Ricker’s population models: effects of clustering
Matvey Kulakov, Galina Neverova
Modelling stage-structured populations of crop pathogens: 1) under environmental change and 2) as part of a food web, using delay differential equations.
Helen Kettle
Simulation modeling of spatial-temporal dynamics of the woody community of shade-tolerant and light-loving species
Alexey Nikolaevich Kolobov
Estimating effective bounds of population growth in a variable environment
Sonja Radosavljevic, Bengt Ove Turesson, Uno Wennergren, Vladimir Kozlov
Frequency-dependent models of population dynamics
Georgiy P Karev
The bifurcation analysis of the conceptual models of the CRISPR host-virus population dynamics
Faina S Berezovskaya, Georgiy P Karev

Ecology

Phase diagram of a fish school model: marches versus circles determined by the relative strength of alignment and cohesion
Yuki Kubo, Yoh Iwasa
Evolution of dispersal syndromes
Margarete Utz, Hannah Dugdale, Franjo Weissing, Jan Komdeur
Resolving the complexity of ecosystem models using network theory
Caner Kazanci
Fractal spatial statistics as a heuristic for dynamic persistence in vegetative ecosystems
Mike A Irvine, Matt Keeling, James Bull

Epidemics

Assessment of the invasion speed of triatomine populations, vectors of Chagas disease
Tewfik Mahdjoub, Christopher Kribs-Zaleta
Information Content of Household-stratied Epidemics
Timothy Kinyanjui, Lorenzo Pellis, House Thomas
STIs on dynamic partnership networks -- characterizing R_0
Ka Yin Leung, Mirjam Kretzschmar, Odo Diekmann
Epidemic spread on weighted networks – the impact of casual contacts
Christel Kamp, Mathieu Moslonka-Lefebvre, Samuel Alizon
Human Behaviour During Epidemics: Results of a Virtual Experiment
Adam Kleczkowski, Savi Maharaj, Susan Rasmussen, Lynn Williams
Analysis of a Deterministic Model for the Transmission Dynamics of Influenza
Adnan Ahmed Khan
Evaluation of tuberculosis control programs in low-burden settings
Giorgio Guzzetta, Marco Ajelli, Denise Kirschner, Stefano Merler

Immunology

Size matters: Mathematical modeling of the type-1 interferon induction
Lars Kaderali, Diana Clausznitzer
Modeling ecliptic phase of SHIV infection in cell culture
Yusuke Kakizoe
Signaling pathway and gene network regulation of NFkB and cytokine mRNA expression in Mastitis
Nicoline Y den Breems, Don Kulasiri
A signal integration model of thymic selection and natural regulatory T cell commitment
Sahamoddin Khailaie, Philippe A Robert, Toker Arras, Jochen Hühn, Michael Meyer-Hermann
The 4-dimensional nature of living molecular systems
Maurício Vieira Kritz

Physiology

A Mathematical Model for the Interaction of the Proteins MMP-1, TIMP-1, and ECM in a Wound
Hannah Pennington, Nitin Krishna, Richard Schugart, Canaan Coppola
A mechano-chemical model of neutrophil polarization
Kai Harold Kopfer

Neuroscience

Simultaneous modeling and clustering of multivariate time series - application to an animal model of alcohol addiction
Lilian Villarín Pildaín, Vineet Kumar, Franziska Matthäus

Regulatory Networks

Mathematical Analysis and Joint Modeling of the M2 Receptor-dependent Signaling And Secondary Messenger Network in CHO Cells
Benjamin Engelhardt, Ramona Schrage, Christian Tränkle, Klaus Mohr, Maik Kschischo, Holger Fröhlich
Relaxation oscillator dynamics of MAPK cascade enabled by local excitation–global inhibition
Marek Kochanczyk, Emilia Kozlowska, Pawel Kocieniewski, Joanna Jaruszewicz, William S. Hlavacek, Tomasz Lipniacki
Bacterial quorum sensing with negative feedback(s)
Christina Kuttler
Simulation and analysis of bistability in osteochondrogenesis
Morgan Germain, Johan Kerkhofs, Liesbet Geris
Adaptive Hybrid Simulations for Multiscale Stochastic Reaction Networks
Benjamin Hepp, Ankit Gupta, Mustafa Khammash
Mathematical modeling of interactions between HSF and NFkB pathways
Jaroslaw Smieja, Malgorzata Kardynska
Exploiting stochastic focusing for noise reduction through feedback
Andreas Milias-Argeitis, Pavol Bauer, Stefan Engblom, Mustafa Khammash
The search for a core functionality network in chondrocyte differentiation using heuristic and genetic algorithms
Johan Kerkhofs, Hans Van Oosterwyck, Liesbet Geris
Identification of noise sources in gene regulatory and signal transduction networks
Michal Komorowski
Modelling Fast CICI Calcium Waves
Zbigniew Peradzynski, Bogdan Kazmierczak
Intrinsic and extrinsic fluctuations in a spatiotemporal oscillatory system
Jan Klosa
Regulation RTK signaling specificity by tuning early endosome distribution
Yannis Kalaidzidis, Roberto Villaseñor, Marino Zerial
Elucidating the role of termination-based feedback mechanisms in mRNA translation in yeast
J Krishnan
p53 regulatory module controlling cell cycle arrest and apoptosis in response to irradiation
Marta Bogdał, Beata Hat, Marek Kochańczyk, Tomasz Lipniacki

Cell and Tissue Biophysics

Computational Studies of B-Z transitions in DNA
Nam-Kyung Lee, Ah-Young Kwon

Bio-engineering

Information processing in biochemical reaction networks
J Krishnan

Minisymposia

Investigation of a Nucleated-Polymerization Model applied to Polyglutamine Aggregation
Carola Kruse, Marie Doumic, H. Thomas Banks
Eco-evolutionary cycles of pathogen virulence under selective predation
Eva Kisdi
Microbiology's N-body problem: How should we estimate the rate of metabolite exchange in spatially structured populations?
Robert J Clegg, Rosemary J Dyson, Jan-Ulrich Kreft
Multiscale model for viral kinetics in patients with HCV under direct-acting antiviral therapy
Dimitra Bon, Anita Kohli, Anuoluwapo Osinusi, Shyamasundaran Kottilil, Eva Herrmann
Three-dimentional mathematical analysis of non-Newtonian blood flow and numerical simulation of its interactions in an atherosclerotic artery
Soumaya Boujena, Oualid Kafi, Nader El Khatib
Mathematical modeling of auxin transport in root meristem of pin mutants
Victoria V Mironova, Fedor Kazantsev
Tensor-structured treatment of the chemical master equation
Vladimir Kazeev
Effective tensor-based methods for the solution of high-dimensional non-stationary problems with the application to the chemical master equation
Ivan Oseledets, Denis Kolesnikov
Traveling wave like solutions to a singular model of kinase-receptor interaction on a sphere
Bogdan Andrzej Kazmierczak, Slawomir Bialecki
Effective Parameters in Population Genetic Models with Class Structure
Arndt Telschow, Yutaka Kobayashi
Numerical treatment of chemotaxis related heterogeneous dynamics arising in cancer invasion simulations
N. Kolbe
The optimal foraging game
Vlastimil Kivan
Mathematical modelling and numerical simulations of bacterial pattern formation in terms of a complex reaction-diffusion-system
Thomas Horger, Christina Kuttler, Barbara Wohlmuth
A vRNA Structured Population Model of Hepatitis C Virus Dynamics
Wojciech Krzyzanski, Xavier Woot de Trixhe, Filip De Ridder, An Vermeulen
Size matters: Mathematical modelling of the type‐1 interferon induction
Diana Clausznitzer, Lars Kaderali
Stochastic processes of mutation, selection and growth in cancer: models and data
Marek Kimmel, Alexandra Jilkine, Cristian Tomasetti, Thomas McDonald, Tomasz Wojdyla
Density-based approaches to interface models and data in root biology
Dimitris Kalogiros, Michael O. Adu, Xavier Draye, Mariya Ptashnyk, A. Glyn Bengougha, Lionel X. Dupuy
Image-based plant phosphate uptake modelling: a case study for root hairs using synchrotron X-ray CT imaging
Sam D. Keyes, Keith R. Daly, Neil Gostling, Alan Marchant, Ian Sinclair, Tiina Roose
How to Understand Morphogen Gradients Development during Biological Development
Anatoly B. Kolomeisky
Numerical treatment of chemotaxis related heterogeneous dynamics arising in cancer invasion simulations
N. Kolbe, N. Sfakianakis, Lukacova Medvidova, N. Hellman, J. Katuchova
Incorporating immunological dynamics in transmission models of varicella zoster virus (VZV) and cytomegalovirus (CMV)
Michiel van Boven, Alies van Lier, Marjolein Korndewal, Jacco Wallinga, Hester de Melker
Identifying host immune factors that drive epidemic dynamics in a multi-scale model of tuberculosis
Giorgio Guzzetta, Marco Ajelli, Denise Kirschner, Stefano Merle
Investigation of a Nucleated-Polymerization Model applied to Polyglutamine Aggregation
Carola Kruse, Marie Doumic-Jauffret, H.Thomas Banks