Presentations and Authors

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Evolution and populations genetics

Evolution of condition-dependent immigration
Mats Gyllenberg, Eva Kisdi, Helene Weigang
Cristina Gutiérrez Pérez
Non-monotonic effects of migration in subdivided populations
Pierangelo Lombardo, Luca Dall'Asta, Andrea Gambassi
Protection of the durability of major resistance genes to plant viruses with quantitative resistance, a modeling approach.
Elsa Rousseau, Jerome Coville, Alain Palloix, Frederic Fabre, Ludovic Mailleret, Benoit Moury, Frederic Grognard
Spatial model of stress-induced transposon proliferation.
Mateusz Kitlas, Michał Startek, Arnaud Le Rouzic, Dariusz Grzebelus, Anna Gambin
Super-symmetry in genomes and its evolution
Michael Sadovsky, Yaroslav Grebnev
The impact of sexual vs. asexual reproduction on transposon proliferation dynamics
Krzysztof Gogolewski, Anna Gambin, Dariusz Grzebelus, Arnaud Le Rouzic, Michał Startek
Real time forecasting of near-future evolution: theory and experiments
Philip Gerrish
On the existence and stability of equilibrium probability measures in Gaussian mutator models with environmental stress within Fisher's geometric framework.
Michał Piotr Startek, Arnaud Le Rouzic, Anna Gambin

Developmental Biology

Modeling the galectin patterning network of the developing chick limb skeleton
Tilmann Glimm
Application of systems biology approach to analyze the development of wheat leaf pubescence.
Alexey Vladimirovich Doroshkov, Ulyana Zubairova, Mikhail Genaev, Sergey Nikolaev, Tatyana Pshenichnikova, Dmitry Afonnikov


Mathematical modeling predicts exponential growth kinetics for metastases in the lymphatic vessels in the absence of vascularization
Ruth Elizabeth Griswold, Simona Podgrabinska, Suvendu Das, Boyce E. Griffith, Charles S. Peskin, Mihaela Skobe
Modelling the role of adhesion in the heterogeneous dynamics of cancer invasion
Pia Domschke, Dumitru Trucu, Alf Gerisch, Mark Chaplain
Uncertainty quantification in a model of tumour invasion
Alf Gerisch
Modeling DNA-Methylation Profiles in Ageing and Cancer.
Jens Przybilla, Thimo Rohlf, Joerg Galle
Simona Galliani
Modeling the regulation of bivalent genes
Joerg Galle, Jens Przybilla

Population Dynamics and Conservation Biology

Spreading Speeds for Stage Structured Plant Populations in Fragmented Landscapes
Mark Alexander Gilbert, Steven M White, James M Bullock, Eamonn A Gaffney
A multivariate SDE model for the time evolution of death rates with an application to the Portuguese population
Sandra Lagarto, Carlos A. Braumann, Dulce Gomes
Optimal natural enemies deployment in patchy environments for augmentative biological control
Bapan GHOSH, Frédéric Grognard, Ludovic Mailleret
Modelling populations subjected to pulsed taking regimes
Ludovic Mailleret, Valérie Lemesle, Frédéric M Hamelin, Vincent Calcagno, Frédéric Grognard
Analysis of ecological time series using state-space models
María Soledad Castaño, Hèlene Guis, Jean Vaillant, Thomas Balenghien, Jean-Claude Delécolle, Thierry Baldet, David Pleydell


Treatment provision in spatially structured models for environmentally transmitted infections
Katy Gaythorpe, Ben Adams
The exclusion problem in seasonally forced eco-epidemiological systems
Jonathan Greenman
A Study of Epidemiological Processes by Criticality Analysis
Hessam Hessami, Nicolas Glade
Evaluation of tuberculosis control programs in low-burden settings
Giorgio Guzzetta, Marco Ajelli, Denise Kirschner, Stefano Merler
Mathematical Modelling of HIV/AIDS in a sex-structured population: Effect of Case Detection and Treatment}
Mini Ghosh


Modelling the infection and immune dynamics induced by a pathogen targeting pulmonary macrophages: influence of strain virulence and host exposure
Natacha Go, Caroline Bidot, Catherine Belloc, Suzanne Touzeau


The Role of Osteocytes in Bone Turnover: A Mathematical Model
Jason M Graham
Mathematical modeling of hydrodynaimcal activation of intravascular blood coagulation and formation of fibre-like structures in intensive blood flow
Oleksii Rukhlenko, Ksenia Zlobina, Georgy Guria
Mathematical Models of Retinal Degeneration
Paul Roberts, Helen Byrne, Alexander Foss, Phil Luthert, Eamonn Gaffney
Integrative modelling and experimental validation of ammonia detoxification after drug induced liver damage
Geraldine Celliere, Ahmed Ghallab, Sebastian Henkel, Stefan Hoehme, Freimut Schliess, Sebastian Zellmer, Jan Hengstler, Dirk Drasdo
Population-of-controllers model explains heterogeneous insulin secretion experiments
Andrea De Gaetano, Claudio Roberto Gaz, Pasquale Palumbo, Simona Panunzi
A mathematical model to describe the flexibility of energy reserves at cellular scale
Masoomeh Taghipoor, Florence Gondret, Jaap VanMilgen
A simplified, geometrical approach to the PKPD of inhaled bronchodilators
Claudio Roberto Gaz, Andrea De Gaetano, Simona Panunzi, George Cremona, Beverley Patterson


Propagation of global resource fluctuations in a cell
Cheol-Min Ghim
A simple decision making model for courtship song of Drosophila melanogaster
Birgit Bruggemeier, Mason Alexander Porter, Stephen Goodwin

Regulatory Networks

A Tropical Method based on Newton Polygon Approach for Algebraic Analysis of Biochemical Reaction Networks
Satya Swarup Samal, Ovidiu Radulescu, Dima Grigoriev, Holger Fröhlich, Andreas Weber
Simulation and analysis of bistability in osteochondrogenesis
Morgan Germain, Johan Kerkhofs, Liesbet Geris
Adaptive Hybrid Simulations for Multiscale Stochastic Reaction Networks
Benjamin Hepp, Ankit Gupta, Mustafa Khammash
The search for a core functionality network in chondrocyte differentiation using heuristic and genetic algorithms
Johan Kerkhofs, Hans Van Oosterwyck, Liesbet Geris

Cell and Tissue Biophysics

On the biomechanics of intestinal stem cell niche formation in vitro and in vivo
Peter Buske, Jens Przybilla, Markus Loeffler, Joerg Galle
Blood Flow and Oxygen Distribution in a Simulated 3D Liver Lobule
Xiao Fu, Julio Belmonte, James Patrick Sluka, Maciej Swat, James Alexander Glazier


Dynamic Flux Balance Analysis for Modeling Lactococcus lactis Mannitol Production
Armando Fernandes, Rafael Costa, Paula Gaspar, Ana Neves, Susana Vinga
Reliability theory for the prediction of osteoarthritis
Francis Woodhouse, Bruce Gardiner, David Smith


Some issues in modeling the atherosclerosis process
Bérénice Grec, Bertrand Maury, Nicolas Meunier, Laurent Navoret, Annie RAOULT
Demographic and genetic structuring in spatial evolutionary epidemiology
Sylvain Gandon
Individualised 1D haemodynamics simulations for endovascular procedures and blood flow stimulation
Sergey Simakov, Timur Gamilov, Yuri Ivanov
Pharmacokinetic/Viral Kinetic modeling of early viral kinetics in different Hepatitis C virus genotypes during Alisporivir monotherapy or in combination with Peg-IFN
Jeremie Guedj
Optimal control applications in blood flow simulations
Jorge Tiago, Telma Guerra, Alberto Gambaruto, Adélia Sequeira
Combining kinetic modeling and transcriptomic analysis to study the resilience on a model cheese reduced ecosystem
Frédéric Fer, Jean-Marie Beckerich, Béatrice Laroche, Sébastien Gaucel, Julie Aubert
Understanding the relative roles of intrinsic and extrinsic heterogeneity in glioblastoma
Jill Gallaher
A Mathematical Exploration of the Development and Therapeutic Implications of Anti-Cancer Drug Resistance
Jan Gevertz
Revising the specialist and generalist predation hypotheses: examples from the Arctic
Frederic Barraquand, John-André Henden, Olivier Gilg, Rolf A Ims, Nigel G Yoccoz
Effect of various doses of alisporivir alone or in combination with Peg‐IFN on the early viral kinetics: a modeling approach
Jérémie Guedj, Thi Huyen Tram Nguyen, France Mentré, Micha Levi, Nikolai Naoumov, Jing Ju
Spatial spread of hepatitis C virus in vivo and in vitro – analyzing single cell dynamics
Fredrik Graw, Harel Dahari, Ruy M. Ribeiro, Alan S. Perelson
Modeling the mechanical regulation of morphogenesis in plants
Christophe Godin
Computational Modelling of Planar Cell Polarity in the Arabidopsis Root Epidermis
Bettina Greese, Markus Grebe, Henrik Jönsson
Density-based approaches to interface models and data in root biology
Dimitris Kalogiros, Michael O. Adu, Xavier Draye, Mariya Ptashnyk, A. Glyn Bengougha, Lionel X. Dupuy
Image-based plant phosphate uptake modelling: a case study for root hairs using synchrotron X-ray CT imaging
Sam D. Keyes, Keith R. Daly, Neil Gostling, Alan Marchant, Ian Sinclair, Tiina Roose
Are circadian clocks limit cycle oscillators?
Didier Gonze
The influence of phenotypic switching on tumour growth rate and cell density profiles
Philip Gerlee
Out with the new, in with the old
David Basanta, Arturo Araujo, Color Lynch, Leah Cook, Shilpa Gupta, Jasreman Dhillon, Jong Park, Julio Pow Sang
Within-tumour diversity as a universal biomarker of prognosis
Trevor Graham
Evolutionary games in cancer therapy
Robert Gatenby
Combining kinetic modeling and transcriptomic analysis to study the resilience on a model cheese reduced ecosystem
Frédéric Fer, Jean-Marie Beckerich, Sébastien Gaucel, Julie Aubert, Béatrice Laroche
Multidimensional models of rapid adaptation to shifting environmental gradients.
Frederic Guillaume
A two-locus model of spatially varying stabilizing or directional selection on a quantitative trait
Ludwig Geroldinger
Computational modeling to assess guidelines, risk factors and cushions addressing sitting-acquired pressure ulcers
Amit Gefen
Unraveling the occurrence of fracture non-unions with a multiscale bioregulatory model
Aurélie Carlier, Nick van Gastel, Geert Carmeliet, Hans Van Oosterwyck, Liesbet Geris
Disentangling human tolerance and resistance against HIV
Roland R. Regoes, Paul J. Mclaren, Manuel Battegay, Enos Bernasconi, Alexandra Calmy, Huldrych F. Günthard, Matthias Hoffmann, Andri Rauch, Amalio Telenti, Jacques Fellay
Identifying host immune factors that drive epidemic dynamics in a multi-scale model of tuberculosis
Giorgio Guzzetta, Marco Ajelli, Denise Kirschner, Stefano Merle
Andrea Pugliese, Carmela Sinisgalli, Alberto Gandolfi

Plenary talk

Counting fossils – do you really need mathematics for that?
Mikael Fortelius, Stefan Geritz, Mats Gyllenberg, Jaakko Toivonen
Quantifying clonal evolution in the human colon
Trevor A Graham