Presentations and Authors

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Evolution and populations genetics

Brownian motion on the Yule tree: variance of the sample variance
Serik Sagitov
Crump-Mode-Jagers branching processes in disease outbreaks
Giacomo Plazzotta, Caroline Colijn
The Classification of Protein Domains into Families and Clans through Entropy Measures based Methods
Rubem P. Mondaini
Direct evidence of the strong co-evolution of somatic and organelle genomes
Michael Sadovsky, Anna Chernyshova
A dynamic network population model with strategic link formation governed by individual preferences
Mark Broom
N. gonorrhoeae NG-MAST genotype and antibiotic resistance profile: is there any correlation?
Konstantin Konstantinovich Avilov
Information geometry and the Wright-Fisher model of mathematical population genetics
Tat Dat Tran
Evolution of condition-dependent immigration
Mats Gyllenberg, Eva Kisdi, Helene Weigang
Multi-gene-loci inheritance in resistance modeling for polyploid populations
Antje Vollrath
Macroscopic and microscopic structures of the family tree for a decomposable branching process
Vladimir Alexeevich Vatutin
Mathematical Models of Speciation with Gene Flow
Ilse Hoellinger, Joachim Hermisson
Tree-free phylogenetic comparative methods: what can we say about a species' trait without observing the phylogeny
Krzysztof Bartoszek, Serik Sagitov
Branching processes in random environment
Elena Evgenievna Dyakonova
Clines With Partial Panmixia In An Environmental Pocket
Linlin Su
Host-Parasite Evolution with a Predator
Jaspreet Toor
An effect of optimal harvest on an evolution of population with age structure
Oksana Zhdanova
Evolutionary dynamics of site-selection
Kalle Parvinen
Cristina Gutiérrez Pérez
Minimum Hellinger distance estimation for Controlled Branching Processes
Carmen Minuesa Abril
Rate of adaptation in sexuals and asexuals: A solvable model of the Fisher-Muller effect
Su-Chan Park, Joachim Krug
Repair and not segregation of damage is the optimal unicellular ageing strategy
Robert J Clegg, Rosemary J Dyson, Jan-Ulrich Kreft
Non-monotonic effects of migration in subdivided populations
Pierangelo Lombardo, Luca Dall'Asta, Andrea Gambassi
Adaptive dynamics on an environmental gradient that changes over a geological time-scale
Jaakko Toivonen
Modeling the impact of selection in protein coding genes
Carina Farah Mugal, Ingemar Kaj
Measures of natural selection in protein coding genes
Carina Farah Mugal, Ingemar Kaj
Evolutionary Models in Structured Populations
Christoforos Hadjichrysanthou
The ecology of resistance – density dependent feedbacks to optimal investment
Ruairi Donnelly
Do sheep cheat themselves by mounting weak immune responses: an adaptive dynamics approach
Daniel Balaz, Christina A Cobbold, Michael J Stear, Joaquín Prada Jiménez de Cisneros, Rodney Beard, Louise Matthews
Protection of the durability of major resistance genes to plant viruses with quantitative resistance, a modeling approach.
Elsa Rousseau, Jerome Coville, Alain Palloix, Frederic Fabre, Ludovic Mailleret, Benoit Moury, Frederic Grognard
A duality relation for type distributions on partitions in the Moran model with recombination
Mareike Esser
Exploring the dynamics of evolution on small networks
Laura Hindersin
Evolution of resource utilization: the coexistence of specialists and generalists
Tuomas Nurmi
Spatial model of stress-induced transposon proliferation.
Mateusz Kitlas, Michał Startek, Arnaud Le Rouzic, Dariusz Grzebelus, Anna Gambin
Continuous approximations of Discrete Processes
Fabio Chalub, Max Souza
Long-scale structures in genomes
Michael Sadovsky, Xenia Nikitina, Eugene Bushmelev
Super-symmetry in genomes and its evolution
Michael Sadovsky, Yaroslav Grebnev
The impact of sexual vs. asexual reproduction on transposon proliferation dynamics
Krzysztof Gogolewski, Anna Gambin, Dariusz Grzebelus, Arnaud Le Rouzic, Michał Startek
Real time forecasting of near-future evolution: theory and experiments
Philip Gerrish
Effect of Neutral Spaces in a Markov Chain Model of Bacterial Evolution
Kush Chandra Khosla, Dan Nichol, Jacob Scott
Can excessive mutation prevent adaptive evolution?
Sophie Penisson
On the existence and stability of equilibrium probability measures in Gaussian mutator models with environmental stress within Fisher's geometric framework.
Michał Piotr Startek, Arnaud Le Rouzic, Anna Gambin
Evolutionary accessible pathways to global fitness maximum on generalized hypercubes
Marcin Zagórski
Predicting the evolution of resistance in Atlantic salmon in response to a macro-parasite invasion
Andy Hoyle
Quantifying the effects of adaptation on genealogies
Taylor Austin Kessinger
The Right Word in the Right Place? Using an evolutionary model to link codon usage bias to an organism’s fitness.
Jan-Hendrik Trösemeier, Susanne Lipp, Holger Lößner, Ina Koch, Christel Kamp
Multiscaling Modelling in Evolutionary Dynamics
Max Souza
Global Stability in Selection-Migration Models
Josef Hofbauer
Evolutionary multiplayer games and polynomials in Bernstein form
Jorge Peña
Adaptive gene introgression after secondary contact
Hildegard Uecker, Derek Setter, Joachim Hermisson
Type distributions on partitions and their ancestry in the Moran model with recombination
Sebastian Probst

Developmental Biology

Model and Simulation of Actin-dependent Cell Movement
Angelika Manhart
Unravelling the rules of multicellular migration during development with models and experiments.
Linus J Schumacher
A quantitative mechanical model of developing epithelial sheets
Jochen Kursawe
Collective cell movement promotes synchronization of coupled genetic oscillators
Koichiro Uriu
Modeling the galectin patterning network of the developing chick limb skeleton
Tilmann Glimm
Modelling chemotactic motion of cells in biological tissues
Bakhti Vasiev
Computational model of trichome spacing pattern formation on growing linear leaf blade
Ulyana Zubairova, Sergey Nikolaev, Alexey Doroshkov, Dmitry Afonnikov
Optimal Control of 2D Cell Migration
Konstantinos Blazakis
A parameter study of a computational angiogenesis model suggests that limited Apelin sensitivity enables tip cells to lead sprouts
Margriet Palm, Marchien Dallinga, Erik van Dijk, Ingeborg Klaassen, Reinier Schlingemann, Roeland Merks
Accelerating reaction-diffusion simulations with non-local position jumping
Paul Richard Taylor
The mechanical and the neurogenic hypothesis for fingerprint formation
Michael Kücken
A selection criterion for spatial patterns in reaction-diffusion systems
Tatiana T. Marquez-Lago
Application of systems biology approach to analyze the development of wheat leaf pubescence.
Alexey Vladimirovich Doroshkov, Ulyana Zubairova, Mikhail Genaev, Sergey Nikolaev, Tatyana Pshenichnikova, Dmitry Afonnikov
A Cell-Based Simulation Environment for Morphogenetic Problems
Simon Tanaka
The tool to study plant hormone auxin distribution in the plant root
Fedor Kazantsev, Victoria V Mironova
Modelling and analysis of filopodia extension regulated by VEGF-Delta-Notch signalling in angiogenic tip-cell selection
Sunny Modhara
Simulating multicellular systems using subcellular element approximations
Majid Abedi
Souvik Bhattacharya


Therapies targeting hypoxia reduce tumor volume and delay the malignant transition in gliomas
Alicia Martínez-González, Mario Durán-Prado, Gabriel F Calvo, Francisco J Alcaín, Luis A Pérez-Romasanta, Victor M Pérez-García
Asymmetrical cell division arising in stem cells and cancer
Ali Ashher Zaidi
Using process algebra to quantify the radiation induced bystander effect
Rachel Lintott
Modelling Tumour heterogeneity and homeostasis disruption in bone cancer
David Basanta
Mechanical Forces in Vascular Sprouting
Rui Travasso
Mathematical modeling predicts exponential growth kinetics for metastases in the lymphatic vessels in the absence of vascularization
Ruth Elizabeth Griswold, Simona Podgrabinska, Suvendu Das, Boyce E. Griffith, Charles S. Peskin, Mihaela Skobe
Optimal control in a mathematical model of low grade glioma
juan Belmonte-Beitia
Multiscale modelling and analysis for cancer development: exploring the role of matrix-degrading enzymes and adhesion in invasion
Dumitru Trucu, Mark A. J. Chaplain
Biphasic modulation of cancer stem cell driven solid tumor dynamics in response to reactivated replicative senescence
Heiko Enderling
Cell migration modeling and data analysis in lung cancer
Damian Stichel
Computer Simulation of the Metastatic Progression and Treatment Interventions
Anja Bethge, Udo Schumacher, Gero Wedemann
Targeting cancer dormancy
Feng Fu
Theoretical investigation of the effect of methylation on deoxy cytidine- deoxy guanosine dinucleotide
Nastaran Asghari Asghari Moghaddam
A systems approach to studying collective migration of cancer cells
Alistair Mark Middleton, Damian Stichel, Franziska Matthaeus
Modelling the role of adhesion in the heterogeneous dynamics of cancer invasion
Pia Domschke, Dumitru Trucu, Alf Gerisch, Mark Chaplain
Genetic drift rescues cancer from evolutionary suicide
Scott Thomas Bickel, Joseph D Juliano, John D Nagy
Uncertainty quantification in a model of tumour invasion
Alf Gerisch
Mathematical Model of Glioma Invasion
Radhia Eljazi
Evolution of resistance to platinum drugs and PARP inhibitors in BRCA-associated cancers.
Kimiyo N. Yamamoto
Modeling DNA-Methylation Profiles in Ageing and Cancer.
Jens Przybilla, Thimo Rohlf, Joerg Galle
Find the Glass Phase Transition Properties in a multi-cell model for tumorogenesis
Yuting Lou
Mathematical modelling of the dynamics of multiple myeloma cell accumulation
Marcel Mohr
Simona Galliani
Stochastic tunneling of two mutations in a population of cancer cells
Hiroshi Haeno, Yosef E Maruvka, Yosef E Maruvka, Yoh Iwasa, Yoh Iwasa, Franziska Michor, Franziska Michor
Simple principles can explain the in vivo population dynamics of tissue specific stem cells
Benjamin Werner
The Role of Stem Cell Plasticity in Ductal Carcinoma
Noemi Picco, Alexander R. A. Anderson
Modeling the regulation of bivalent genes
Joerg Galle, Jens Przybilla
The role of CCN1 in glioma virotherapy with oncolytic herpes simplex virus
Karly Jacobsen
Towards patient-specific biology-driven heterogeneous radiation planning: using a computational model of tumor growth to identify novel radiation sensitivity signatures.
Jacob Gardinier Scott, Alexander G Fletcher, Claire L Timlin, David Basanta, Alexander R A Anderson, Philip K Maini
Normal wound healing and tumor angiogenesis as a game of competitive inhibition
Irina Kareva
Adhesion Defects are Sufficient to Initiate Polycystic Kidney Disease
Julio Monti Belmonte
POD-DEIM Approach on Dimension Reduction of a Model of Chemotactic Bacteria Patterns in Semi-Solid Medium
Gabriel Dimitriu
A modelling framework for elucidating the interplay between drug transport and cellular effects in tumours
J Krishnan
Metastatic dynamics and systemic inhibition of angiogenesis: implications for global dormancy and metastatic acceleration after surgery
Sebastien Benzekry
Controllability of models of anticancer combined therapy with multiple delays in control.
Andrzej Swierniak
Stochastic models for tumors submitted to a radiotherapy treatment
Pierre Vallois
On a nonstandard numerical algorithm for a mathematical model of cancer invasion
Mikhail Kolev

Population Dynamics and Conservation Biology

On the life of populations in habitats with constant carrying capacity
Peter Jagers
Fox-Voles Interactions: Selection and Dynamical Properties of a Multi-Species Functional Response.
Virgile Baudrot
The influence of turbulence on the competition between buoyant and non-buoyant plankton prey species in a shallow lake.
Michael Bengfort
The coupled Ricker’s population models: effects of clustering
Matvey Kulakov, Galina Neverova
Consequences of Obesity Epidemic; the Impact of “Vertical Transmission” of Obesity on Population Dynamics
Keisuke Ejima
Traveling wavefronts in population and disease models with nonlocal reaction and delay
Peter Pang
Modelling stage-structured populations of crop pathogens: 1) under environmental change and 2) as part of a food web, using delay differential equations.
Helen Kettle
Let Markov chains evolve along genealogies
Vincent Bansaye
How symbionts turning from friends to foes induce Allee effects in predators
Mickael Teixeira Alves, Frank Hilker
A nonlinear age-structured model of semelparous species
Radosław Wieczorek
Intraspecific competition models considering two resources
Nora Stahnke
On a sexual model of phenotypic evolution
Ryszard Rudnicki
On the analytical study of a nonlinear SPDE arising as a model of phytoplankton aggregation
Nadjia El Saadi, Zakia Benbaziz
Emergence of Cooperation with chain-reaction-extinction
Hyeong-Chai Jeong
Vitalii V. Akimenko
Mass-structured individual based model for the chemostat
Coralie Fritsch
Stefano Belloni
Spreading Speeds for Stage Structured Plant Populations in Fragmented Landscapes
Mark Alexander Gilbert, Steven M White, James M Bullock, Eamonn A Gaffney
A multivariate SDE model for the time evolution of death rates with an application to the Portuguese population
Sandra Lagarto, Carlos A. Braumann, Dulce Gomes
Estimation of the variance effective population size in age-structured populations
Fredrik Olsson, Ola Hössjer
An optimal control problem for a reaction-diffusion model of invasive species
Narcisa Apreutesei
Simulation modeling of spatial-temporal dynamics of the woody community of shade-tolerant and light-loving species
Alexey Nikolaevich Kolobov
Evolution dynamics of a model for gene duplication under adaptive conflict
Jeong-Man Park
Modeling circadian clock-cell cycle interaction effects on cell population growth rates
Raouf El Cheikh, Samuel Bernard, Nader El Khatib
Pareto-efficient fishing strategies allow large conservation benefits for small costs in yield
Niklas L.P. Lundström
Estimating effective bounds of population growth in a variable environment
Sonja Radosavljevic, Bengt Ove Turesson, Uno Wennergren, Vladimir Kozlov
On optimization of substrate removal in a bioreactor with biofilms and suspended biomass
Alma Masic, Hermann J Eberl
Optimization of biogas production in a model for anaerobic digestion with inhibition
Marion Weedermann
Number fluctuations of populations with a short life cycle: Is it the result of density dependent regulation or influence of external factors?
Galina Neverova, Efim Frisman
Optimal natural enemies deployment in patchy environments for augmentative biological control
Bapan GHOSH, Frédéric Grognard, Ludovic Mailleret
Spatio-temporal Structure of Branching Random Walks in Non Homogeneous Environments
Elena Borisovna Yarovaya
Impact of extended diapause on the rate of invasion of a population of triatomine with an Allee effect
Amel Bessenouci Hakem
Period-length estimate of Lyapunov exponent for probing transient chaos in model of population dynamics
Katarzyna Buszko, Krzysztof Stefański
Modelling populations subjected to pulsed taking regimes
Ludovic Mailleret, Valérie Lemesle, Frédéric M Hamelin, Vincent Calcagno, Frédéric Grognard
Frequency-dependent models of population dynamics
Georgiy P Karev
Dynamics of spatial pattern networks in predator-prey systems
Josinaldo Menezes da Silva
The bifurcation analysis of the conceptual models of the CRISPR host-virus population dynamics
Faina S Berezovskaya, Georgiy P Karev
Analysis of ecological time series using state-space models
María Soledad Castaño, Hèlene Guis, Jean Vaillant, Thomas Balenghien, Jean-Claude Delécolle, Thierry Baldet, David Pleydell
Bayesian method for assessing environmental pollution effects on organism dynamic energy budget
Baba Issa Camara
Symmetry based methods for constructing exact solutions of the diffusive Lotka-Volterra system
Logistic approximations and their consequences for bifurcations patterns and long-run dynamical behavior
Torsten Axel Lindström
Stochastic semigroups in structured population models
Katarzyna Pichor
Weakly Supercritical Branching Random Walks
Ekaterina Antonenko
Global solvability and stability of equilibrium of multi-species model with cross diffusion
Herve Michel DJOUOSSEU TENKAM, Roumen Anguelov


From Individual to Collective Dynamics in Argentine Ants
Maria Vela, Marco A. Fontelos
Insights from the Application of Temporal Difference Learning in Models of Foraging
Jan Teichmann
Grazing strategies for the control of gastrointestinal nematodes in sheep: a stochastic model in a seasonal environment.
Martin Lopez Garcia
Mathematical modelling of seasonal migration
John Gerard Donohue, Petri Tomas Piiroinen
Niche theory for a complicated world
Géza Meszéna, György Barabás, András Szilágyi
Optimal resource allocation in the plant-fungi mutualism for a growing system
Kouki Uchinomiya, Yoh Iwasa
Evolution of root and shoot growth allocation in trees
Magnus Lindh, Eddie Wadbro, Lai Zhang, Åke Brännström
A fractional-order diffusion model to predict transgenic pollen dispersal
Emmanuel Hanert, Valentin Vallaeys, Rebecca Tyson, Eric Deleersnijder
Phase diagram of a fish school model: marches versus circles determined by the relative strength of alignment and cohesion
Yuki Kubo, Yoh Iwasa
Games of Corruption: How to Suppress Illegal Logging.
JoungHun Lee, Karl Sigmund, Ulf Dieckmann, Yoh Iwasa
Reversible phenotypic plasticity with continuous adaptation
Ferdinand Pfab
Incorporating environmental factors into tick-borne disease models
Adrian Worton
A resource-based model of multi-species competitions under mutations
Weini Huang
The importance of distance-dependent synchrony of environmental coloured noise in patchy environments
Uno Wennergren
Response of Poikilotherms to Extreme Temperature Events
Rebecca C. Tyson, Garrett Culos
Evolution of dispersal syndromes
Margarete Utz, Hannah Dugdale, Franjo Weissing, Jan Komdeur
Modeling Tree Crown Expansion with a Biomass Transport Equation
Robert Beyer
The ecology of wildlife disease surveillance
Glenn Marion
Emergence of diversity-stability-productivity relationships in a generic multi-species resource competition framework
Stephen Catterall, Glenn Marion
Evolutionary stability and geographic variation of pollination networks
Arndt Telschow, Shoko Sakai
Resolving the complexity of ecosystem models using network theory
Caner Kazanci
A hierarchical Bayesian model for gene ranking in in metagenomics based on differential abundance
Viktor Jonsson
Ecological Traps: Modeling habitat selection for mobile animals in heterogeneous landscapes
Jessica Hearns
Disease in group-defending prey can benefit predators
Andrew M. Bate
Fractal spatial statistics as a heuristic for dynamic persistence in vegetative ecosystems
Mike A Irvine, Matt Keeling, James Bull


New agent-based model for an influenza epidemic spreading in cities.
Valeriy Dmitriy Perminov
Measuring Disease Spread in Stochastic Epidemic Models
M J Lopez-Herrero
Assessment of the invasion speed of triatomine populations, vectors of Chagas disease
Tewfik Mahdjoub, Christopher Kribs-Zaleta
Probabilistic differential diagnosis of imported cases: A case study of MERS
Hiroshi Nishiura
Dynamics of low and high pathogenic avian influenza in wild and domestic bird populations
Necibe Tuncer
Julia Amador
Which nodes should be prioritised for intervention to effectively control epidemic outbreaks in networks?
Christoforos Hadjichrysanthou
Markovian Susceptible-Infectious-Susceptible (SIS) Dynamics on Finite Networks: Endemic Prevalence and Invasion Probability
Robert Wilkinson
Counter-intuitive responses to movement-based disease control measures in livestock
Jamie Christian Prentice
Information Content of Household-stratied Epidemics
Timothy Kinyanjui, Lorenzo Pellis, House Thomas
Vaccination and Clinical Severity: Is the Effectiveness of Contact Tracing and Case Isolation Hampered by Past Vaccination
Kenji Mizumoto
Impact of treatment length and treatment default on drug-resistant tuberculosis epidemiology
Paula Rodrigues
Treatment provision in spatially structured models for environmentally transmitted infections
Katy Gaythorpe, Ben Adams
STIs on dynamic partnership networks -- characterizing R_0
Ka Yin Leung, Mirjam Kretzschmar, Odo Diekmann
Combining statistical and dynamic modelling approaches to within-host analysis of Porcine Reproductive and Respiratory Syndrome (PRRS) virus infections
Zeenath Islam, Stephen C Bishop, Nicholas J Savil, Raymond R. R. Rowland, Joan K Lunney, Benjamin Trible, Andrea Doeschl-Wilson
Exploring viral evolution to characterise HCV transmission dynamics in a high-risk prison population
Fabio Luciani
Geometric Epidemics: An application of differential geometric sampling methods to stochastic epidemic models
Samuel Charles Bilson
End of an SIR epidemic on a random network
Pieter Trapman, Ana Serafimović
A game-theoretic approach to diagnostic test adoption and disease control in livestock
Rodney Beard
Epidemic spread on weighted networks – the impact of casual contacts
Christel Kamp, Mathieu Moslonka-Lefebvre, Samuel Alizon
On a simple stochastic epidemic SEIHR model and its diffusion approximation
Marco Ferrante
Epidemics and density-dependent diffusion on heterogeneous metapopulations
Jordi Ripoll
Modeling the individual vaccination decisions : a structural explanation
Vector-borne disease dynamics with host circulation
Max Souza
Human Behaviour During Epidemics: Results of a Virtual Experiment
Adam Kleczkowski, Savi Maharaj, Susan Rasmussen, Lynn Williams
Discretization of the SIS-Volterra model by nonstandard finite difference method
Jean M-S Lubuma, Yibeltal A Terefe
Modeling of the spread and control of Mycobacterium avium subsp. paratuberculosis in a metapopulation of cattle herds
Gael Beaunée, Elisabeta Vergu, Pauline Ezanno
An opportunistic diesases model
Marcos Marva
Global dynamics of compartmental models for the spread of ectoparasite-borne diseases
Attila Dénes, Gergely Röst
Analysis of Labour Productivity in the Presence of Substance Abuse
Isaac Takaidza
Influence of Climate Variables on Scorpion Envenomation
Schehrazad SELMANE
Analysis of a Deterministic Model for the Transmission Dynamics of Influenza
Adnan Ahmed Khan
Optimal treatment- and diagnostic strategies in the context of ‘treatment for prevention’ against HIV-1 in resource-rich and -poor settings
Sulav Duwal, Stefanie Winkelmann, Christof Schütte, Max von Kleist
Stochastic modelling for age-structured dengue epidemiology with and without seasonal variation
Hannah Woodall, Ben Adams
The exclusion problem in seasonally forced eco-epidemiological systems
Jonathan Greenman
A Study of Epidemiological Processes by Criticality Analysis
Hessam Hessami, Nicolas Glade
How to adapt vine growth and cultural practices to better control an outbreak of powdery mildew on a vineyard?
Jean-Baptiste Burie, Jean-Baptiste Burie
Evaluation of tuberculosis control programs in low-burden settings
Giorgio Guzzetta, Marco Ajelli, Denise Kirschner, Stefano Merler
Modelling Aquatic Viral Dynamics: The Importance of Transmission
Eryll Ogg
Optimal vaccination policies as Mean Field Games equilibriums
Laetitia Laguzet
Mathematical Modelling of HIV/AIDS in a sex-structured population: Effect of Case Detection and Treatment}
Mini Ghosh
Using mathematical modelling to design an optimal HIV prevention intervention among female sex workers: insights from Avahan AIDS Initiative in India
Jasmina Panovska-Griffiths


Reaction diffusion equations and the chronification of liver infections
Dirk Langemann
Size matters: Mathematical modeling of the type-1 interferon induction
Lars Kaderali, Diana Clausznitzer
Quantification of the acute phase of virus infection in HIV-1 infected humanized mouse
Hiroki Ikeda
Modeling ecliptic phase of SHIV infection in cell culture
Yusuke Kakizoe
Signaling pathway and gene network regulation of NFkB and cytokine mRNA expression in Mastitis
Nicoline Y den Breems, Don Kulasiri
Modelling HTLV-I as a Multi-Locus System
Aaron G Lim
Modelling the infection and immune dynamics induced by a pathogen targeting pulmonary macrophages: influence of strain virulence and host exposure
Natacha Go, Caroline Bidot, Catherine Belloc, Suzanne Touzeau
Limit Theorems for Renyi Entropy and Divergence with Applications to DNA Diversity Analysis
Michal Tadeusz Seweryn
A signal integration model of thymic selection and natural regulatory T cell commitment
Sahamoddin Khailaie, Philippe A Robert, Toker Arras, Jochen Hühn, Michael Meyer-Hermann
The 4-dimensional nature of living molecular systems
Maurício Vieira Kritz


The Role of Osteocytes in Bone Turnover: A Mathematical Model
Jason M Graham
A Mathematical Model for the Interaction of the Proteins MMP-1, TIMP-1, and ECM in a Wound
Hannah Pennington, Nitin Krishna, Richard Schugart, Canaan Coppola
Generalized framework for cell-type and condition-specific metabolic models
Semidán Robaina Estévez, Zoran Nikoloski
A simple model of wound healing in normal and diabetic mice
Lucie Bowden
A morphoelastic model of dermal wound healing
Lucie Bowden
Modeling of regulatory loops controlling galactolipid biosynthesis in the inner envelope membrane of chloroplasts
Eric Maréchal, Olivier Bastien
A mechano-chemical model of neutrophil polarization
Kai Harold Kopfer
Model of the dynamics of food intake, body weight and energy expenditure in rats
Marine Jacquier, Fabien Crauste, Christophe Soulage, Hédi Soula
A Mathematical Model for Lymphangiogenesis in Wound Healing
Arianna Bianchi
Mathematical modeling of hydrodynaimcal activation of intravascular blood coagulation and formation of fibre-like structures in intensive blood flow
Oleksii Rukhlenko, Ksenia Zlobina, Georgy Guria
Spatial modelling of cytokine dynamics within osteoarthritic cartilage
Michelle Baker
Mathematical Models of Retinal Degeneration
Paul Roberts, Helen Byrne, Alexander Foss, Phil Luthert, Eamonn Gaffney
Integrative modelling and experimental validation of ammonia detoxification after drug induced liver damage
Geraldine Celliere, Ahmed Ghallab, Sebastian Henkel, Stefan Hoehme, Freimut Schliess, Sebastian Zellmer, Jan Hengstler, Dirk Drasdo
Modelling the impact of plant shoot architecture on leaf cooling: coupled heat and mass transfer simulations
Lloyd Bridge
Alessandro Bolli, Armindo Salvador
Population-of-controllers model explains heterogeneous insulin secretion experiments
Andrea De Gaetano, Claudio Roberto Gaz, Pasquale Palumbo, Simona Panunzi
A mathematical model to describe the flexibility of energy reserves at cellular scale
Masoomeh Taghipoor, Florence Gondret, Jaap VanMilgen
A simplified, geometrical approach to the PKPD of inhaled bronchodilators
Claudio Roberto Gaz, Andrea De Gaetano, Simona Panunzi, George Cremona, Beverley Patterson
A mathematical model for fluid-glucose-albumin transport in peritoneal dialysis
Roman CHERNIHA, Jacek Waniewski


Simultaneous modeling and clustering of multivariate time series - application to an animal model of alcohol addiction
Lilian Villarín Pildaín, Vineet Kumar, Franziska Matthäus
Propagation of global resource fluctuations in a cell
Cheol-Min Ghim
A simple decision making model for courtship song of Drosophila melanogaster
Birgit Bruggemeier, Mason Alexander Porter, Stephen Goodwin
A one-dimensional moving-boundary model for tubulin-driven axonal growth
Stefan Diehl, Anders Heyden, Stefano Perna
"Mathematical modelling of the dynamics and the role of the lipid composition in Alzheimer’s disease"
Guido Santos Rosales, Mario Díaz, Néstor Torres

Regulatory Networks

Noise propagation in enzymatic reactions under transcriptional repression
Diego A Oyarzún, Jean-Baptiste Lugagne, Guy-Bart V Stan
Dynamics of a Bistable Molecular Switch
Marta Tyran-Kaminska
Autocrine FGF feedback can establish distinct states of Nanog expression in pluripotent stem cells
Dora Lakatos
Modeling and analysis of a gene-regulatory feed-forward loop with basal expression of the second regulator
Louisa Roselius, Dirk Langemann, Johannes Müller, Burghard Hense, Dieter Jahn, Richard Münch
A Mathematical Model of Intermolecular Autophosphorylation with an Application to Aurora B Kinase
Kevin Doherty
Stochastic stability of a compound cell-cycle model
Joanna Tyrcha, John Hertz
Time delays in stochastic models of gene regulation
Jacek Miękisz
Sparsity promoting Bayesian parameter estimation and uncertainty quantification. Application to the gap gene system of Drosophila melanogaster.
Nikolaos Sfakianakis, Martin Simon
A Tropical Method based on Newton Polygon Approach for Algebraic Analysis of Biochemical Reaction Networks
Satya Swarup Samal, Ovidiu Radulescu, Dima Grigoriev, Holger Fröhlich, Andreas Weber
Early stage dynamics of miRNA-driven FFL depends upon miRNA action
Alexander M. Samsonov, Maria A. Duk, Maria G. Samsonova
From signaling processes to large-scale behavior - E.coli chemotaxis, search strategy and pattern formation
Franziska Matthäus
Mathematical Analysis and Joint Modeling of the M2 Receptor-dependent Signaling And Secondary Messenger Network in CHO Cells
Benjamin Engelhardt, Ramona Schrage, Christian Tränkle, Klaus Mohr, Maik Kschischo, Holger Fröhlich
Algebraic Statistical Model for Biochemical Dynamics Inference
Grzegorz A Rempala
Logic-based models and ODEs - a bidirectional modeling approach
Claudia Stötzel, Firdevs Topcu-Alici, Susanna Röblitz, Heike Siebert
Relaxation oscillator dynamics of MAPK cascade enabled by local excitation–global inhibition
Marek Kochanczyk, Emilia Kozlowska, Pawel Kocieniewski, Joanna Jaruszewicz, William S. Hlavacek, Tomasz Lipniacki
Modelling spatio-temporal dynamics in regulatory networks for cell polarity
Peter Rashkov
Stochastic model of gene expression
Weronika Siwek
Bacterial quorum sensing with negative feedback(s)
Christina Kuttler
Simulation and analysis of bistability in osteochondrogenesis
Morgan Germain, Johan Kerkhofs, Liesbet Geris
Understanding bistability in yeast glycolysis using general properties of metabolic pathways
Bob Planqué
Gianluca Selvaggio, Pedro M. B. M. Coelho, Armindo Salvador
Adaptive Hybrid Simulations for Multiscale Stochastic Reaction Networks
Benjamin Hepp, Ankit Gupta, Mustafa Khammash
Mathematical modeling of interactions between HSF and NFkB pathways
Jaroslaw Smieja, Malgorzata Kardynska
Exploiting stochastic focusing for noise reduction through feedback
Andreas Milias-Argeitis, Pavol Bauer, Stefan Engblom, Mustafa Khammash
Reduction of biochemical systems by delayed quasi-steady state assumptions
Tomas Vejchodsky
Extending the Limits of Bifurcation Analysis: an Illustration from Yeast Glycolysis
Gosse Borger Overal
Non-classic effects in stochastic gene expression
Tatiana T. Marquez-Lago
Mathematical models of mi-RNA dependent gene regulation in experimental procedures
Jaroslaw Smieja, Marzena Dolbniak
The search for a core functionality network in chondrocyte differentiation using heuristic and genetic algorithms
Johan Kerkhofs, Hans Van Oosterwyck, Liesbet Geris
Unraveling subpopulation structures and dynamics with ODE constrained mixture modeling
Jan Hasenauer, Christine Hasenauer, Tim Hucho, Fabian Theis
The cell nucleus regulates not only the dynamics of gene expression, but also its noise.
Jaroslav Albert
Multi-parameter sensitivity analysis based on the conditional mutual information.
Agata Charzyńska
Identification of noise sources in gene regulatory and signal transduction networks
Michal Komorowski
Modelling Fast CICI Calcium Waves
Zbigniew Peradzynski, Bogdan Kazmierczak
Intrinsic and extrinsic fluctuations in a spatiotemporal oscillatory system
Jan Klosa
Exact quadratization of nonlinear systems: a useful tool in mathematical biology
Pasquale Palumbo, Francesco Carravetta
Regulation RTK signaling specificity by tuning early endosome distribution
Yannis Kalaidzidis, Roberto Villaseñor, Marino Zerial
Parameter Estimation for the System Size Expansion
Fabian Froehlich, Jan Hasenauer, Fabian Theis
Elucidating the role of termination-based feedback mechanisms in mRNA translation in yeast
J Krishnan
p53 regulatory module controlling cell cycle arrest and apoptosis in response to irradiation
Marta Bogdał, Beata Hat, Marek Kochańczyk, Tomasz Lipniacki
Computational Model of the Autophagy-Translation Switch
Paulina Szymańska

Cell and Tissue Biophysics

Receptor-mediated endocytosis and intracellular transport: self-organization, tasks and limitations. A mathematical model approach.
Konstantin Novikov, Alexei Romanyukha
Breast Cancer and TGFb signaling
Gianluca Ascolani
A multiscale analysis of tissue growth and nutrient transport in vitro
Reuben O'Dea
The Flatness of Lamellipodia Explained by the Interaction Between Actin Dynamics and Membrane Deformation
Christoph Winkler
On the biomechanics of intestinal stem cell niche formation in vitro and in vivo
Peter Buske, Jens Przybilla, Markus Loeffler, Joerg Galle
Blood Flow and Oxygen Distribution in a Simulated 3D Liver Lobule
Xiao Fu, Julio Belmonte, James Patrick Sluka, Maciej Swat, James Alexander Glazier
A Model of Contractile Forces in Acto-Myosin Bundles
Stefanie Hirsch
Using mathematical models to exploit the potential of skin in non-invasive drug monitoring
K A Jane White, Begona Delgado-Charro
Computational Studies of B-Z transitions in DNA
Nam-Kyung Lee, Ah-Young Kwon
Blood is thicker than water – Calculating the optimal hematocrit
Stefan Schuster, Heiko Stark
Swimming Patterns in Zoospores
Fordyce A. Davidson
Physarum Can Compute Shortest Paths
Vincenzo Bonifaci
Describing and quantifying the binding pathway of Histone H1
Gustavo Carrero, Carlos Contreras, Carlos Contreras, Michael J. Hendzel
Uncovering Nuclear Diffusion Barriers in Closed Mitosis
Eder Zavala, Tatiana Marquez-Lago
Modeling the Directional Growth of Aggregated Archaeal Cells
Viktor Milkevych, Damien Batstone
Substrate dependend stress fibre organisation dynamics in adult stem cells
Carina Wollnik
On the dome formation during Zebrafish epiboly
Martin Bock
The method of additional particles for models of self-assembly in multilevel biological systems
Ivan A Denisov, Peter I Belobrov
The effect of plasma membrane compartmentalization on receptor assembly dynamics
Andre Leier, Changjiang You, Tatiana T. Marquez-Lago, Jacob Piehler
Mathematical modelling of VEGF-VEGFR binding and trafficking.
Maria Sawicka
Mathematical modeling of mechanical cell-extracellular matrix interactions
Elisabeth Geraldine Rens, Roeland Merks
Cell-To-Cell Microfluidic Interaction Models for Tissue Biophysics
Peter I Belobrov
Pattern Formation in a Generalized Phyllotactic System
Robert Beyer
Mechanism of The Nanodiamond – Protein Collective Aggregation
Peter I Belobrov
Biomechanics of tissue movements
Andras Czirok


How can we approach reaction-diffusion systems with concentrated terms on the rough border of a thin channel?
Marcone Correa Pereira
Guillermo Vidal Diez de Ulzurrun
Extracting T-lymphocyte cell dynamics in biommetic microenvironments
Aysha Alsuwaid, Jeremy Teo Choon Meng, Yanthe E Pearson
Dynamic Flux Balance Analysis for Modeling Lactococcus lactis Mannitol Production
Armando Fernandes, Rafael Costa, Paula Gaspar, Ana Neves, Susana Vinga
Reliability theory for the prediction of osteoarthritis
Francis Woodhouse, Bruce Gardiner, David Smith
Information processing in biochemical reaction networks
J Krishnan


Quantification of Arthritis Progression Using Micro-CT Data
Carl-Magnus Svensson, Ingo Irmler, Bianca Hofmann, Hans Peter Saluz, Marc Thilo Figge
Automated multi-cell segmentation and tracking from live bioimaging datasets
Yanthe E. Pearson, Jeremy Teo Choon Meng
The plant cytoskeleton as a transportation network
David Breuer
Automated Characterization of Cell Tracks Based on Local Migration Behaviour
Zeinab Mokhtariasl
Modelling cerebral vasculature based on magnetic resonance angiograms
Krzysztof Psiuk-Maksymowicz
Model-based outliers treatment in image-based systems biology: filtering vs. noise model
Sabrina Hross, Fabian Theis, Jan Hasenauer


Some issues in modeling the atherosclerosis process
Bérénice Grec, Bertrand Maury, Nicolas Meunier, Laurent Navoret, Annie RAOULT
Investigation of a Nucleated-Polymerization Model applied to Polyglutamine Aggregation
Carola Kruse, Marie Doumic, H. Thomas Banks
Co-evolutionary cycles in host-parasite interactions
Alex Best
The effect of linked selection on invasion and survival of locally beneficial mutations
Simon Aeschbacher, Reinhard Buerger
The interplay of infectivity that decreases with virulence and limited cross-immunity: (toy) models for respiratory disease evolution
Hans (J.A.J.) Metz
Modelling of blood flow and blood coagulation
Vitaly Volpert
Eco-evolutionary cycles of pathogen virulence under selective predation
Eva Kisdi
How specificity and epidemiology drive the co-evolution of static trait diversity in hosts and parasites
Andy White
Adam Moroz
Impact of extra-cranial venous anomalies on cerebral haemodynamics. Numerical study via a global model
Eleuterio Francisco Toro, Lucas Omar Muller
Relevance of the Voronoi domain partition for position-jump reaction-diffusion processes on nonuniform rectilinear lattices
Christian Adam Yates
Multi-resolution stochastic reaction-diffusion and fractional-diffusion methods with applications to pattern formation, brain tumor growth, and epidemics
Basil Bayati
Demographic and genetic structuring in spatial evolutionary epidemiology
Sylvain Gandon
Microbiology's N-body problem: How should we estimate the rate of metabolite exchange in spatially structured populations?
Robert J Clegg, Rosemary J Dyson, Jan-Ulrich Kreft
Individualised 1D haemodynamics simulations for endovascular procedures and blood flow stimulation
Sergey Simakov, Timur Gamilov, Yuri Ivanov
Pharmacokinetic/Viral Kinetic modeling of early viral kinetics in different Hepatitis C virus genotypes during Alisporivir monotherapy or in combination with Peg-IFN
Jeremie Guedj
Modeling Hollow Fibers Dialyzers
Angiolo Farina
Multiscale model for viral kinetics in patients with HCV under direct-acting antiviral therapy
Dimitra Bon, Anita Kohli, Anuoluwapo Osinusi, Shyamasundaran Kottilil, Eva Herrmann
Three-dimentional mathematical analysis of non-Newtonian blood flow and numerical simulation of its interactions in an atherosclerotic artery
Soumaya Boujena, Oualid Kafi, Nader El Khatib
Where signal and noise collide: qualitative effects of stochasticity on population fluctuations
Karen C. Abbott
Spatio-temporal modelling of gene regulatory networks and intracellular signalling pathways
Mark AJ Chaplain
Mathematical modeling of auxin transport in root meristem of pin mutants
Victoria V Mironova, Fedor Kazantsev
Collective-Risk dilemmas and Risky Climate Game
Maria Abou Chakra
Benchmarking analysis methods for live cell single particle tracking using simulated microscopy
Martin Lindén, Johan Elf
Tensor-structured treatment of the chemical master equation
Vladimir Kazeev
Tackling the construction of probability distributions arising in Bio-Chemical networks
Vikram Sunkara
Effective tensor-based methods for the solution of high-dimensional non-stationary problems with the application to the chemical master equation
Ivan Oseledets, Denis Kolesnikov
Modelling of platelet-fibrin clot formation in flow with a DPD-PDE method
Alen Tosenberger
Modelling and numerical simulation of cellular molecular signaling
Andrea Cangiani
Mathematical modelling of intracellular protein dynamics: the importance of active transport along microtubules
Z. Szymanska
Spatial stochastic simulation of intracellular pathways
A. Hellander
Spatio-temporal modelling of gene regulatory networks: transcription factors, negative feedback loops and oscillatory dynamics
M. Sturrock
Dynamics of p53 in single cells: A spatio-temporal reaction-diffusion PDE model for activation and regulation of p53
Elias Jan, Luna Dimitrio, Jean Clairambault, Roberto Natalini
Traveling wave like solutions to a singular model of kinase-receptor interaction on a sphere
Bogdan Andrzej Kazmierczak, Slawomir Bialecki
A mathematical model of clot growth in flowing blood
Jevgenija Pavlova, Antonio Fasano, João Janela, Adélia Sequeira
Optimal control applications in blood flow simulations
Jorge Tiago, Telma Guerra, Alberto Gambaruto, Adélia Sequeira
Effective Parameters in Population Genetic Models with Class Structure
Arndt Telschow, Yutaka Kobayashi
Towards a mathematical model for the atherosclerotic plaque formation
Jorge Tiago, Telma Silva, Adélia Sequeira, Rafael Santos
Collective cell movement
Michael Plank
Predicting microbial community assembly
William Sloan
Metagenomics data analysis using a latent block model: application to plant-microbial communities interactions in the rhizosphere
Julie Aubert
Combining kinetic modeling and transcriptomic analysis to study the resilience on a model cheese reduced ecosystem
Frédéric Fer, Jean-Marie Beckerich, Béatrice Laroche, Sébastien Gaucel, Julie Aubert
Epistasis and Natural Selection Shape the Mutational Architecture of Quantitative Traits
Reinhard Bürger
The effects of biocontrol on cyclic pest populations and its unexpected outcomes
Bret Elderd, James Reilly
Generalized mass action systems and positive solutions of polynomial systems with parameters
Georg Regensburger
Ruling out Hopf bifurcations in biochemical reaction networks
Casian Pantea
Numerical treatment of chemotaxis related heterogeneous dynamics arising in cancer invasion simulations
N. Kolbe
Does Organismal Complexity Favor the Evolution of Diversity?
Claus Rueffler
Patterns of Species Ranges, Speciation, and Extinction
Aysegul Birand
The biogeography of adaptive radiations and the geographic overlap of sister species
Mikael Pontarp
Niche conservatism through species turnover
Jörgen Ripa
Synergy of vacuolation and cell-cell repulsion in lumen formation
Sonja Boas, Roeland Merks
Cellular Potts Models for Cell Migration
Marco Scianna
Multiscale techniques in cancer modelling and treatment prediction: A Compucell3D approach
Gibin Powathil
Measuring and modeling dynamics of VEGF retention in vascular patterning
Walter de Back
The Cellular Potts Model in the context of Cell Surface Mechanics
Stan Maree
Image-based computational studies of shear-thinning effects in the progression of cerebral aneurysms
Adelia Sequeira
Mostafa Bendahmane
Time delays in stochastic models of evolutionary games
Jacek Miekisz
Combinatorial Aspects of Parker’s model
Chris Cannings
The optimal foraging game
Vlastimil Kivan
Cross-feeding as a game
Torbjörn Lundh
Game theory and adaptation of reproductive phenology to climate change in birds with dominance hierarchies
Jacob Johannsson
Evolutionary Exploration of the Finitely Repeated Prisoners Dilemma - The Effect of Out-of-Equilibrium Play
Kristian Lindgren
Natural selection under limited population growth. Replicator dynamics and eco-evolutionary feedback
Krzysztof Argasinski
Efficient data-driven simulation of infection spread in the Swedish cattle population
Stefan Widgren
Inferring global network properties from egocentric data with applications to epidemics
Tom Britton
Modeling animal disease spread: including several paths of disease spread in a bayesian data-driven approach
Uno Wennergren
Interface instabilities in bacterial biofilms
Laoshen Li
The role of quorum-sensing architecture in determining bacterial population behaviour
Sara Jabbari
An approach for pressure-induced mathematical modeling of bacterial pattern formation
Aenne Oelker
Mathematical modelling and numerical simulations of bacterial pattern formation in terms of a complex reaction-diffusion-system
Thomas Horger, Christina Kuttler, Barbara Wohlmuth
Moment-dynamics models for cell biology processes
Ruth Baker
Modeling the Dynamics of Tumor Heterogeneity
Ruchira Datta
Dynamics of diversity in spatially evolving populations
Jasmine Foo
Understanding the relative roles of intrinsic and extrinsic heterogeneity in glioblastoma
Jill Gallaher
A Mathematical Exploration of the Development and Therapeutic Implications of Anti-Cancer Drug Resistance
Jan Gevertz
Clonal evolution of human intestinal stem cell niches
Marnix Jansen
Radiation-induced bystander signals: Role of spatial effects in radiation response
Gibin Powathil
Quantifying the effect of spatially varying factors of resistance to radiation therapy in primary brain tumors: predictions from a patient-specific model
Russell C. Rockne
Tracking the invisible: a probabilistic approach to field cancerization in head and neck carcinoma
Marc Ryser
Rapid adaptation from standing variance and de novo mutation: a general deterministic approximation
Guillaume Martin
Evolutionary rescue of a pathogen: emergence of viral drug resistance
Helen Alexander
Modeling Distribution of Reads from Leukemic Cells DNA through Mixture of Truncated Poisson Distributions
Nicolas Flores Castillo
Revising the specialist and generalist predation hypotheses: examples from the Arctic
Frederic Barraquand, John-André Henden, Olivier Gilg, Rolf A Ims, Nigel G Yoccoz
Nonlinearities in continuous-space moment equation models: possible insights from Taylor expansions
Frederic Barraquand, David Murrell
Evolutionary diversification in finite and in subdivided populations
Florence Debarre
Low-dimensional representations of stochastic dynamics on discrete structures
Thomas Allan House
Message passing and moment closure for Susceptible-Infectious-Removed (SIR) epidemic dynamics on networks
Kieran Sharkey
Spatial correlations in a multi-species model
Deborah C Markham
Models for regeneration: reconciling pattern formation and growth
Hans Meinhardt
Stem Cells and Regeneration: Feedback, Niche, and Epigenetic Regulation
Qing Nie
A mathematical model for cell differentiation, as an evolutionary and regulated process
Fred Vermolen
A quantitative data-driven model of cell proliferation and cell migration in the axolotl spinal cord regeneration
Osvaldo Chara
Effect of various doses of alisporivir alone or in combination with Peg‐IFN on the early viral kinetics: a modeling approach
Jérémie Guedj, Thi Huyen Tram Nguyen, France Mentré, Micha Levi, Nikolai Naoumov, Jing Ju
Modelling ribavirin mode of action in a specifically designed clinical trial in patients with hepatitis C
Eva Herrmann
Modeling HCV kinetics in vivo and in vitro indicates that the liver plays a role in HCV clearance
Harel Dahari
Spatial spread of hepatitis C virus in vivo and in vitro – analyzing single cell dynamics
Fredrik Graw, Harel Dahari, Ruy M. Ribeiro, Alan S. Perelson
A vRNA Structured Population Model of Hepatitis C Virus Dynamics
Wojciech Krzyzanski, Xavier Woot de Trixhe, Filip De Ridder, An Vermeulen
Mechanism-based analysis of drug combination effects on HCV replication in Huh-7 cells
Shingo Iwami
Size matters: Mathematical modelling of the type‐1 interferon induction
Diana Clausznitzer, Lars Kaderali
Mathematical models of immune responses to hepatitis B virus infection
Stanca Ciupe, Ruy Ribeiro, Alan Parelson
A predator-prey model with time delay and the Mackey-Glass attractor
Gail Wolkowicz
Stabilizing population cycles with adaptive limiter control
Frank Hilker
Retinal Plasticity: Mathematical modelling of positional information of sub-apical neurons
Effects of dispersal and plant genotype on a cyclic herbivore population
Frederic Barraquand, Karen Abbott, Bret Elderd, Rebecca Tyson, Christina Cobbold
Stochastic processes of mutation, selection and growth in cancer: models and data
Marek Kimmel, Alexandra Jilkine, Cristian Tomasetti, Thomas McDonald, Tomasz Wojdyla
Coupling biochemical models to physics of transport in leaf physiology
Ansgar Bohmann, Andrés Chavarría-Krauser
Modeling of Zinc Uptake and Transport in Plant Roots
Juliane Claus, Andrés Chavarría-Krauser
Understanding the paradoxical effects of katanin microtuble severing on the self-organisation of the plant cortical array
Eva E. Deinum, Simon H. H Tindemans, Bela M. Mulder
Soil-Root Interactions : Observations and modeling with a specific focus on water uptake
Claude Doussan
Modelling Root Growth with PDE. The C-root model
Yves Dumont, Thierry Fourcaud, Emilie Peynaud
Modeling the mechanical regulation of morphogenesis in plants
Christophe Godin
Computational Modelling of Planar Cell Polarity in the Arabidopsis Root Epidermis
Bettina Greese, Markus Grebe, Henrik Jönsson
Understanding plant shoot development - a Computational Morphodynamics approach
Henrik Jönsson
Density-based approaches to interface models and data in root biology
Dimitris Kalogiros, Michael O. Adu, Xavier Draye, Mariya Ptashnyk, A. Glyn Bengougha, Lionel X. Dupuy
Image-based plant phosphate uptake modelling: a case study for root hairs using synchrotron X-ray CT imaging
Sam D. Keyes, Keith R. Daly, Neil Gostling, Alan Marchant, Ian Sinclair, Tiina Roose
At the crossroads: how auxin biases positioning of asymmetric cell divisions in the root meristem
Athanasius F M (Stan) Marée
Modeling a Plant Cell Wall: interactions between mechanics and biochemistry
Brian Seguin, Mariya Ptashnyk
The effect of geometry on morphogenesis in the Arabidopsis embryo
Richard S. Smith, George Bassel, Gabriella Mosca, Pierre Barbier de Reuille, Saiko Yoshida, Dolf Weijers
Introduction to SPP-models and description of the problem
Daniel Strömbom
Spatial "self-propelled particle" and non-spatial "reaction-network" models explain locust swarm cohesion
Christian Yates
Swarming at Mesoscopic Scales - The role of fluctuations
Pawel Romanczuk
Bifurcation dynamics in models for self-organised biological aggregations
Raluca Eftimie
Control Theory Based Approaches to Dynamic Network Analysis
James Anderson
Ultrasensitivity and concentration robustness in bifunctional enzyme systems
Ronny Straube
Ultrasensitivity in phosphorylation cycles with little substrate
Bruno Martins, Peter S. Swain
Robustness of MAPK signalling at various expression levels of Erk1/2
Franziska Witzel, Raphaela Fritsche-Guenther, Anja Sieber, Ricarda Herr, Nadine Schmidt, Sandra Braun, Tilman Brummer, Christine Sers, Nil Blütghen
Digital Clock Modelling
Ozgur E Akman
The sensitivity of oscillatory properties
Katharina Baum, Jana Wolf
Encoding of stimulus intensities by sequences of Ca2+ spikes
Kevin Thurley, Stephen C. Tovey, Gregor Moenke, Victora L. Prince, Abha Meena, Andrew P. Thomas, Alexander Skupin, Colin W. Taylor, Martin Falcke
The effect of T-cell homeostasis on solid and liquid tumors
Mark Robertson-Tessi, Derek Park, Adam Mailloux, Kimberly Luddy, Pearlie Burnette, Alexander Anderson
A mathematical model for effect of tumor stroma on rate of metastasis formation
Ardith El-Kareh, Timothy Secomb
Chaste: An open source C++ library for computational physiology and biology
Alexander Fletcher
Modeling tissues using CompuCell3D
Maciej Swat
EPISIM Platform: Graphical multi-scale modeling and simulation of multicellular systems
Thomas Sütterlin
CellSys: Modular software for physics-based tissue modelling in 3D
Tim Johann
Modeling animal tissues in VirtualLeaf: Towards an off-lattice Cellular `Potts’ model
Roeland Merks
Biocellion: Accelerating multicellular biological simulation
Ryan Tasseff
Morpheus: User-friendly modeling of multicellular systems
Walter de Back
Modeling the cyanobacterial circadian clock
Sophie De Buyl
Simple numerical techniques for reaction-diffusion on general geometry
Colin Macdonald
Mathematical modelling of the plant circadian clock
Mirela Domijan
Pattern formation in morphogenesis on evolving biological surfaces: Theory, numerics and applications
Anotida Madzvamuse
Solving diffusion equations on evolving surfaces defined by biological images
Tom Ranner
Multiscale modelling of cancer cell motility: a predictive model of adhesions, blebbing, and spreading
Melda Tozluoğlu
Biological signal processing with a genetic toggle switch
Georg Fritz
Pulse dynamics in two component, singularly perturbed reaction-diffusion equations
Frits Veerman
Moving interface and free boundary problems that arise in the study of cell motility
Chandrasekhar Venkataraman
Are circadian clocks limit cycle oscillators?
Didier Gonze
Role of Noise in Multistable Dynamics of a non-adiabatic Repressilator
Evgeny Volkov, Ilya Potapov, Boris Zhurov
Robust Concentration and Frequency Control in Oscillatory Homeostats
Peter Ruoff
Conditions for oscillations in the NF-kB pathway
Jana Wolf
Tensor-based parametric analysis of stochastic genetic regulatory network
Shuohao Liao
Solution of the chemical master equation by the separation of variables and alternating optimization methods
Sergey Dolgov
Linking adaptive dynamics to neutral variation
Régis Ferrière
Extending he canonical equation of adaptive dynamics to Mendelian populations with any population structure: replace the population size by the effective population size from population genetics
J.A.J. (Hans) Metz
An edema‐ based model for diffuse low‐grade gliomas under radiotherapy
M. Badoual
Investigation of the effect of phenotypic plasticity on tumor growth
Katrin Boettger
Linear dependency between residual tumor fraction and regression probability can provide decision support after partial resection of pilocytic astrocytoma
Thomas Buder
The influence of phenotypic switching on tumour growth rate and cell density profiles
Philip Gerlee
Modeling dose‐painting effects in radiotherapy by means of an agent based model
Juan Carlos López Alfonso
In‐silico glioma models: what can we take advantage for the clinical practice?
Alicia Martínez‐González
A data‐driven calibration of a nonlinear mechanistic model for DNA damage and repair: applications to radiosurgery and heavy ion irradiation treatment for glioblastoma
Russel Rockne
Quantifying changes in glioma biology with treatment using modeling of edema formation and clinical imaging
Kristin R. Swanson
Cellular automaton models for collective cell behaviour
Andreas Deutsch
Emergence of biological-like systems, e.g. Brownian motor, by reduction of effective temperature
Alex Fiegel
How to Understand Morphogen Gradients Development during Biological Development
Anatoly B. Kolomeisky
A Path-based Approach to Random Walks on Landscapes, with Applications to How Proteins Evolve New Function
Michael Manhart
Emergence of criticality in living systems through adaptation and evolution: Practice Makes Critical
Amos Maritan
Statistical mechanics of nucleosome crowding in yeast
Alexandre Morozov
Toxin-Antitoxin Battle in Bacteria
Namiko Mitarai
Moving at the air-water interface
Adhesion of membranes via receptor-ligand complexes: Binding cooperativity, domain formation and line tension effects
Bartosz Rozycki
Regulating Looping in
Anirvan Sengupta
Mechanistic models of multicellular computation
David Swab
Spatial heterogeneity in drug concentrations can facilitate the emergence of resistance to cancer therapy
Feng Fu
An evolutionary model of micrometastatic progression: are driver mutations in the primary tumor important?
Christopher McFarland
Cell Trafficking Evolutionary Model for Metastatic Breast Cancer
Jeffrey West
One-dimensional model of cytoskeleton dynamics: application to interstitial migration
M.T. Sanchez
Molecular mechanisms underlying Xenopus retinal stem cell proliferation
On the understanding of avian photoreceptor mosaics development
Retinal angiogenesis and vascular pathology in response to hypoxia
A Combined Experimental and Numerical Study of Guidance Cues in the Developing Murine Retina
The role of VEGF-C and CCR7/CCL21 in Tumor Lymphangiogenesis.
Mechanisms of lymphangiogenesis and metastasis
Yihai Cao
Mathematical modeling predicts exponential growth of metastases in lymphatic vessels
Dendritic cell chemotaxis in physiological matrices in well-defined 3D gradients reveals differential response to CCL21 vs. CCL19
Ulrike Haessler
Inflammatory lymphangiogenesis and identification of new lymphangiogenic mediators
Cornelia Halin
Role of the extracellular matrix and lymphatics in fluid volume regulation
Helge Wiig
Stochastic Modeling of Prion Protein Dynamics and Transmission in Yeast
Suzanne Sindi
Distinguishing between mean-field, moment dynamics and stochastic descriptions of birth death movement processes
Matthew Simpson
Clinically Relevant Mathematical Models of Cancer
Alexander R.A Anderson
Optimization of radiation schedules for proneural gliomas via mathematical modeling
Kevin Leder, Ken Pitter, Eric Hollande, Franziska Michor
Out with the new, in with the old
David Basanta, Arturo Araujo, Color Lynch, Leah Cook, Shilpa Gupta, Jasreman Dhillon, Jong Park, Julio Pow Sang
Mathematical Neuro-Oncology: Translating Patient-specific Mathematical Modeling of Brain Tumors to Clinical Care
Kristin Swanson
Within-tumour diversity as a universal biomarker of prognosis
Trevor Graham
Evolutionary games in cancer therapy
Robert Gatenby
Simple numerical techniques for reaction-diffusion on general geometry.
Colin Mcdonald
Power spectra of stochastic reaction-diffusion equations on stochastically growing domains
Thomas Wooley
A Computational Model for Eukaryotic Cell Migration and Chemotaxis
John MacKenzie, R.H Insall, M Nolan
Pattern formation on curved surfaces: an analytical exploration
Frist Veerman
Plasticity of cancer cell migration: Extracellular matrix derives the optimisation of blebbing, adhesions, and spreading.
Melda Tozluoglu
Stochastic approaches for understanding the impact of antibacterial drugs on bacteria population dynamics
Diana David-Rus
Emergence of Modularity in Biology
Michael Deem
Thermodynamic limits on noisy cellular sensing
Sorin Tanase-Nicola
Adhesion of membranes via receptor-ligand complexes: Binding cooperativity, domain formation and line tension effects
Bartosz Ryzycki
Transcriptional bursting and bacterial adaptation
Ovidiu Radulescu, Cathy Royer, Nathalie Declerck
Uncovering the Natural History of Metastatic Cancer from Autopsy Data
Leonid Hanin
The specificity-abundance relationship in microbial communities.
Mahendra Mariadassou, Samuel Pichon, Dieter Ebert
Energetics and evolution.
T.P. Curtis, L. Øvreås, W:T Sloan
Metagenomic data analysis and integration in a functional population model of fiber degradation by the human intestinal microbiota.
Béatrice Laroche, Marion Leclerc, Sébastien Raguideau
Combining kinetic modeling and transcriptomic analysis to study the resilience on a model cheese reduced ecosystem
Frédéric Fer, Jean-Marie Beckerich, Sébastien Gaucel, Julie Aubert, Béatrice Laroche
Analysis of open chemical reaction networks governed by mass-action kinetics
Bayu Jayawardhana
Elimination of Intermediate Species in the Stochastic Reaction Networks
Daniele Cappelletti
Ruling out Hopf bifurcations in biochemical reaction networks
Casian Pantea
Complex concentration coupling in chemical reaction networks
Zoran Nikoloski, Jost Neigenfind
Graph-theoretic conditions for multistationarity for mass-conserved biochemical networks
Maya Mincheva
Implicit dose-response curves
Mercedes Pérez Millán
A multi-locus, haploid-selection, symmetric-viability model
Jeffrey Chasnov
Multidimensional models of rapid adaptation to shifting environmental gradients.
Frederic Guillaume
A two-locus model of spatially varying stabilizing or directional selection on a quantitative trait
Ludwig Geroldinger
How can genetic interactions evolve in response to migration load?
Stephen Proulx
Community dynamics and the evolution of dispersal
Francois Massol
"The biogeography of adaptive radiations and the geographic overlap of sister species"
Mikael Pontarp
Rapid adaptation from standing variance and de novo mutation: a general deterministic approximation
Guillaume Martin
Epidemiological feedbacks aect evolutionary emergence of pathogens
Matthew Harteld, Samuel Alizon
Insights into the evolution of drug resistance from simple models
Troy Day
Modeling and simulation of low grade urinary bladder carcinoma
Svetlana Bunimovich
Numerical treatment of chemotaxis related heterogeneous dynamics arising in cancer invasion simulations
N. Kolbe, N. Sfakianakis, Lukacova Medvidova, N. Hellman, J. Katuchova
Mathematical models of cancer invasion of tissue: local and nonlocal interactions
Cristian Morales Rodrigo
On a multiscale model involving cell contractivity and its e_ects on tumor invasion
Christian Stinner
Computational modeling to assess guidelines, risk factors and cushions addressing sitting-acquired pressure ulcers
Amit Gefen
Variance-reduced simulation of individual-based models for tumor growth
Annelies Lejon, Giovanni Samaey
Mathematical modelling and numerical simulations of actin dynamics in the eukaryotic cell
Anotida Madzvamuse
Unraveling the occurrence of fracture non-unions with a multiscale bioregulatory model
Aurélie Carlier, Nick van Gastel, Geert Carmeliet, Hans Van Oosterwyck, Liesbet Geris
Mathematical modelling of wound infection implications to delayed wound healing
Etelvina Javierre, Fred Vermolen
On minimizers of the bending energy of two-phase biomembranes
Marco Veneroni
Radially Projected Finite Element Method on Evolving Surfaces
Necibe Tuncer
Identifying Optimal Treatment Protocols for the Treatment of a Bacterial Infection in a Chronic Ischemic Wound Using Hyperbaric Oxygen Therapy
Richard Schugart
Hybrid cell-based modeling of mechanical cell-matrix feedback during collective cell behavior
Roeland M.H Merks, Ren_e F.M. van Oers, Elisabeth G. Rens
Efficient data-driven simulation of infection spread in the Swedish cattle population
Stefan Widgren, Pavol Bauer, Stefan Engblom
Pathogen spread and control on the network of French cattle movements through coupling of intra- and inter-herd models
Elisabeta Vergu, Pauline Ezanno, B. L. Dutta
"Relevance of the Voronoi domain partition for position-jump reaction-diffusion processes on nonuniform rectilinear lattices"
Christian Yates
Mesoscopic Stochastic Modeling and the Diffusion Operator
Stefan Engblom
Stochastic simulation of di ffusion on unstructured meshes via first exit times.
Lina Meinecke
Modelling HIV virulence evolution in the context of immune escape
Christiaan H. van Dorp, Rob J. de Boer, Michiel van Boven
Disentangling human tolerance and resistance against HIV
Roland R. Regoes, Paul J. Mclaren, Manuel Battegay, Enos Bernasconi, Alexandra Calmy, Huldrych F. Günthard, Matthias Hoffmann, Andri Rauch, Amalio Telenti, Jacques Fellay
The coevolution of human antiviral protein APOBEC3G and HIV protein Vif: A theoretical study
Akira Sasaki
Immunology and epidemiology of hepatitis C virus: plenty of data for a nested model approach.
Fabio Luciani
Incorporating immunological dynamics in transmission models of varicella zoster virus (VZV) and cytomegalovirus (CMV)
Michiel van Boven, Alies van Lier, Marjolein Korndewal, Jacco Wallinga, Hester de Melker
Identifying host immune factors that drive epidemic dynamics in a multi-scale model of tuberculosis
Giorgio Guzzetta, Marco Ajelli, Denise Kirschner, Stefano Merle
Combining a within host model for immune response and waning immunity with a population level transmission model
Wilfred de Graaf
Backward bifurcations in a model coupling within-host and between-host dynamics
Zhilan Feng
Andrea Pugliese, Carmela Sinisgalli, Alberto Gandolfi
Investigation of a Nucleated-Polymerization Model applied to Polyglutamine Aggregation
Carola Kruse, Marie Doumic-Jauffret, H.Thomas Banks
Mathematical Modeling of Prion Aggregate Dynamics and Transmission in Yeast
Suzanne S. Sindi
Enzyme-Limited Nucleated Polymerization Model of Prion Aggregation
Jason Karl Davis, Suzanne S. Sindi
Simulation of cell mechanics in a micropipette aspiration experiment using a highly detail model
Paul van liedekerke, Johannes Neitsch, Bart Smeets, Tim Odenthal, Herman Ramon, Dirk Drasdo
Evolution of senescence in heterogeneous landscapes
Olivier Cotto

Plenary talk

Statistics for networks with a view towards neuroscience
Mathisca de Gunst
Dynamics and design principles in cell cycles, clocks and signals
David Rand
Modelling the Kinetics of Protein Polymerization in Amyloid Diseases
Marie Doumic
Estimating R_0 in emerging diseases: the effect of population structure is small
Tom Britton
Multiple merger coalescents in population genetics
Johannes Birkner
Counting fossils – do you really need mathematics for that?
Mikael Fortelius, Stefan Geritz, Mats Gyllenberg, Jaakko Toivonen
Quantifying clonal evolution in the human colon
Trevor A Graham